1 HAMP#1
177-245 aa · 69 aa · 14.5% of protein
Raw token
HAMP:177:0.0000000196:245:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS09440
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassHKTypeClassicLength476 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014269345#H8K24_RS09440Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length476 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 476 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa476 aa
Domain-by-domain annotation3 items
2 HisKA#2
249-314 aa · 66 aa · 13.9% of protein
Raw token
HisKA:249:0.000000000000746:314:66:643 HATPase_c#3
362-471 aa · 110 aa · 23.1% of protein
Raw token
HATPase_c:362:1.98e-30:471:110:109- Raw architecture: HAMP:177:0.0000000196:245:69:69#HisKA:249:0.000000000000746:314:66:64#HATPase_c:362:1.98e-30:471:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014269345::NZ_JACOGH010000008.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75900-78023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_09440RefSeq proteinWP_186582362.1
Context group ID
GCF_014269345::NZ_JACOGH010000008.1::G00031Context members
H8K24_RS09440H8K24_RS09445
Partner locus tags
H8K24_RS09440H8K24_RS09445
Partner old locus tags
H8K24_09440H8K24_09445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_186582362.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS09440Primary locus identifier stored in the genes table.
Old locus tagH8K24_09440Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000008.1Sequence record reported by the local genomic context database.
Genomic interval75 900-77 330 nt1 431 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 900-78 023 ntGCF_014269345::NZ_JACOGH010000008.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000008.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000008.1All displayed genes belong to this local TCS context.
Neighborhood span75 900-78 023 nt2 124 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 900 nt78 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8K24_RS09440GCF_014269345#H8K24_RS09440
HKClassicCurrent focus
75 900-77 330 nt · Reverse (-)
H8K24_RS09445GCF_014269345#H8K24_RS09445
RROmpR
77 334-78 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014269345#H8K24_RS09440The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1658633
Simplified PFAM architecture for HKOC_1658633
PFAM domain coverage: 176 / 476 aa (37.0%)
1 aa476 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[249-314] | HATPase_c[362-471]
- Domain count: 2
- Matched identifier: HKOC_1658633
- Positioned domains: HisKA 249-314 ; HATPase_c 362-471
Cluster members and taxonomy
Representative gene: GCF_014269345#H8K24_RS09440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key