1 Response_reg#1
4-117 aa · 114 aa · 21.5% of protein
Raw token
Response_reg:4:3.59e-25:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS00355
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014269345#H8K24_RS00355Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 531 aa (36.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
436-478 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:436:0.00000185:478:43:423 HTH_AraC#3
490-527 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:490:0.00000000327:527:38:42- Raw architecture: Response_reg:4:3.59e-25:117:114:111#HTH_AraC:436:0.00000185:478:43:42#HTH_AraC:490:0.00000000327:527:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014269345::NZ_JACOGH010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span71044-74440Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_00355RefSeq proteinWP_021652321.1
Context group ID
GCF_014269345::NZ_JACOGH010000001.1::G00002Context members
H8K24_RS00350H8K24_RS00355
Partner locus tags
H8K24_RS00350H8K24_RS00355
Partner old locus tags
H8K24_00350H8K24_00355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021652321.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW5CP50Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW5CP50_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS00355Primary locus identifier stored in the genes table.
Old locus tagH8K24_00355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000001.1Sequence record reported by the local genomic context database.
Genomic interval72 845-74 440 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span71 044-74 440 ntGCF_014269345::NZ_JACOGH010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span71 044-74 440 nt3 397 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 044 nt74 440 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8K24_RS00350GCF_014269345#H8K24_RS00350
HKClassic
71 044-72 870 nt · Forward (+)
H8K24_RS00355GCF_014269345#H8K24_RS00355
RRunclassifiedCurrent focus
72 845-74 440 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000466565#HMPREF1547_RS17910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0109655
Simplified PFAM architecture for RROC_0109655
PFAM domain coverage: 320 / 531 aa (60.3%)
1 aa531 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-116] | GGDEF_2[164-290] | HTH_18[450-529]
- Domain count: 3
- Matched identifier: RROC_0109655
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GGDEF_2 164-290 ; GGDEF_2 164-290 ; HTH_18 450-529 ; HTH_18 450-529
Cluster members and taxonomy
Representative gene: GCF_000466565#HMPREF1547_RS17910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key