1 Response_reg#1
11-121 aa · 111 aa · 47.0% of protein
Raw token
Response_reg:11:8.84e-31:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS08945
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014269345#H8K24_RS08945Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 236 aa (79.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:153:1.33e-27:229:77:77- Raw architecture: Response_reg:11:8.84e-31:121:112:111#Trans_reg_C:153:1.33e-27:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014269345::NZ_JACOGH010000007.1::G00029
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span189490-191576Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_08945RefSeq proteinWP_003431910.1
Context group ID
GCF_014269345::NZ_JACOGH010000007.1::G00029Context members
H8K24_RS08945H8K24_RS08950
Partner locus tags
H8K24_RS08945H8K24_RS08950
Partner old locus tags
H8K24_08945H8K24_08950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003431910.1Primary protein accession used for annex mappings.
UniProt accessionA0A3E5E8M4Primary UniProt accession resolved in the annex database.
UniProt IDA0A3E5E8M4_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS08945Primary locus identifier stored in the genes table.
Old locus tagH8K24_08945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000007.1Sequence record reported by the local genomic context database.
Genomic interval189 490-190 200 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span189 490-191 576 ntGCF_014269345::NZ_JACOGH010000007.1::G00029
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000007.1::G00029Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000007.1All displayed genes belong to this local TCS context.
Neighborhood span189 490-191 576 nt2 087 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
189 490 nt191 576 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8K24_RS08945GCF_014269345#H8K24_RS08945
RROmpRCurrent focus
189 490-190 200 nt · Forward (+)
H8K24_RS08950GCF_014269345#H8K24_RS08950
HKClassic
190 200-191 576 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000235925#HMPREF1123_RS15045Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0988885
Simplified PFAM architecture for RROC_0988885
PFAM domain coverage: 184 / 236 aa (78.0%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[11-119] | Trans_reg_C[154-228]
- Domain count: 2
- Matched identifier: RROC_0988885
- Positioned domains: Response_reg 11-119 ; Response_reg 11-119 ; Trans_reg_C 154-228 ; Trans_reg_C 154-228
Cluster members and taxonomy
Representative gene: GCF_000235925#HMPREF1123_RS15045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key