1 HisKA#1
57-118 aa · 62 aa · 23.0% of protein
Raw token
HisKA:57:0.0000000000829:118:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS07795
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassHKTypeClassicLength269 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014269345#H8K24_RS07795Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length269 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 269 aa (60.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa269 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
169-268 aa · 100 aa · 37.2% of protein
Raw token
HATPase_c:169:6.39e-31:268:100:109- Raw architecture: HisKA:57:0.0000000000829:118:62:64#HATPase_c:169:6.39e-31:268:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014269345::NZ_JACOGH010000006.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52893-54462Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_07795RefSeq proteinWP_330380893.1
Context group ID
GCF_014269345::NZ_JACOGH010000006.1::G00021Context members
H8K24_RS07795H8K24_RS07800
Partner locus tags
H8K24_RS07795H8K24_RS07800
Partner old locus tags
H8K24_07795H8K24_07800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330380893.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS07795Primary locus identifier stored in the genes table.
Old locus tagH8K24_07795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000006.1Sequence record reported by the local genomic context database.
Genomic interval52 893-53 702 nt810 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 893-54 462 ntGCF_014269345::NZ_JACOGH010000006.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000006.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000006.1All displayed genes belong to this local TCS context.
Neighborhood span52 893-54 462 nt1 570 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 893 nt54 462 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8K24_RS07795GCF_014269345#H8K24_RS07795
HKClassicCurrent focus
52 893-53 702 nt · Reverse (-)
H8K24_RS07800GCF_014269345#H8K24_RS07800
RROmpR
53 785-54 462 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003481925#DXB00_RS00985Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2887840
Simplified PFAM architecture for HKOC_2887840
PFAM domain coverage: 164 / 299 aa (54.8%)
1 aa299 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-148] | HATPase_c[198-298]
- Domain count: 2
- Matched identifier: HKOC_2887840
- Positioned domains: HisKA 86-148 ; HATPase_c 198-298
Cluster members and taxonomy
Representative gene: GCF_003481925#DXB00_RS00985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key