1 Response_reg#1
261-373 aa · 113 aa · 14.0% of protein
Raw token
Response_reg:261:9.14e-16:373:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS06735
Response regulator, PleD_VieA family
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassRRTypePleD_VieALength808 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_014269345#H8K24_RS06735Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length808 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage456 / 808 aa (56.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa808 aa
Domain-by-domain annotation3 items
2 GGDEF#2
390-497 aa · 108 aa · 13.4% of protein
Raw token
GGDEF:390:1.86e-20:497:111:1603 EAL#3
555-789 aa · 235 aa · 29.1% of protein
Raw token
EAL:555:2.79e-65:789:237:235- Raw architecture: Response_reg:261:9.14e-16:373:114:111#GGDEF:390:1.86e-20:497:111:160#EAL:555:2.79e-65:789:237:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_014269345::NZ_JACOGH010000004.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span232041-234467Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_06735RefSeq proteinWP_278603682.1
Context group ID
GCF_014269345::NZ_JACOGH010000004.1::G00019Context members
H8K24_RS06735
Partner locus tags
H8K24_RS06735
Partner old locus tags
H8K24_06735
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_278603682.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS06735Primary locus identifier stored in the genes table.
Old locus tagH8K24_06735Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000004.1Sequence record reported by the local genomic context database.
Genomic interval232 041-234 467 nt2 427 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span232 041-234 467 ntGCF_014269345::NZ_JACOGH010000004.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000004.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span232 041-234 467 nt2 427 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
232 041 nt234 467 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
H8K24_RS06735GCF_014269345#H8K24_RS06735
RRPleD_VieACurrent focus
232 041-234 467 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_014269345#H8K24_RS06735The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0015587
Simplified PFAM architecture for RROC_0015587
PFAM domain coverage: 447 / 808 aa (55.3%)
1 aa808 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[261-372] | GGDEF[390-490] | EAL[556-789]
- Domain count: 3
- Matched identifier: RROC_0015587
- Positioned domains: Response_reg 261-372 ; GGDEF 390-490 ; EAL 556-789
Cluster members and taxonomy
Representative gene: GCF_014269345#H8K24_RS06735
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key