1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:1.73e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS05865
Response regulator RpfG family
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_014269345#H8K24_RS05865Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 499 aa (42.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
193-299 aa · 107 aa · 21.4% of protein
Raw token
HD:193:0.0000000000000258:299:107:110- Raw architecture: Response_reg:7:1.73e-27:110:105:111#HD:193:0.0000000000000258:299:107:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_014269345::NZ_JACOGH010000004.1::G00018
Group size44 locus tags listed below.
HK / RR3 / 1Counts resolved for the local TCS neighborhood.
Context span40997-51264Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_05865RefSeq proteinWP_110101990.1
Context group ID
GCF_014269345::NZ_JACOGH010000004.1::G00018Context members
H8K24_RS05855H8K24_RS05860H8K24_RS05865H8K24_RS05875
Partner locus tags
H8K24_RS05855H8K24_RS05860H8K24_RS05865H8K24_RS05875
Partner old locus tags
H8K24_05855H8K24_05860H8K24_05865H8K24_05875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_110101990.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS05865Primary locus identifier stored in the genes table.
Old locus tagH8K24_05865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000004.1Sequence record reported by the local genomic context database.
Genomic interval47 110-48 609 nt1 500 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 997-51 264 ntGCF_014269345::NZ_JACOGH010000004.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000004.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000004.1All displayed genes belong to this local TCS context.
Neighborhood span40 997-51 264 nt10 268 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 997 nt51 264 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
H8K24_RS05855GCF_014269345#H8K24_RS05855
HKHybrid
40 997-43 828 nt · Reverse (-)
H8K24_RS05860GCF_014269345#H8K24_RS05860
HKHybrid
44 007-46 862 nt · Reverse (-)
H8K24_RS05865GCF_014269345#H8K24_RS05865
RRRpfGCurrent focus
47 110-48 609 nt · Reverse (-)
H8K24_RS05875GCF_014269345#H8K24_RS05875
HKHybrid
49 078-51 264 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003184505#DMI82_RS00230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159193
Simplified PFAM architecture for RROC_0159193
PFAM domain coverage: 254 / 499 aa (50.9%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[178-320]
- Domain count: 2
- Matched identifier: RROC_0159193
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 178-320 ; HD_5 178-320
Cluster members and taxonomy
Representative gene: GCF_003184505#DMI82_RS00230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key