1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:4.02e-32:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
H8K24_RS03175
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_014269345
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_014269345#H8K24_RS03175Stable P2CS identifier used across views.
GenomeGCF_014269345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-224 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:148:1.23e-27:224:77:77- Raw architecture: Response_reg:4:4.02e-32:113:111:111#Trans_reg_C:148:1.23e-27:224:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_014269345::NZ_JACOGH010000002.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span173799-175727Genomic interval covered by the local TCS group.
Identifiers
Old locus tagH8K24_03175RefSeq proteinWP_031476721.1
Context group ID
GCF_014269345::NZ_JACOGH010000002.1::G00012Context members
H8K24_RS03170H8K24_RS03175
Partner locus tags
H8K24_RS03170H8K24_RS03175
Partner old locus tags
H8K24_03170H8K24_03175
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_031476721.1Primary protein accession used for annex mappings.
UniProt accessionA0A415IHP9Primary UniProt accession resolved in the annex database.
UniProt IDA0A415IHP9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagH8K24_RS03175Primary locus identifier stored in the genes table.
Old locus tagH8K24_03175Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACOGH010000002.1Sequence record reported by the local genomic context database.
Genomic interval175 044-175 727 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span173 799-175 727 ntGCF_014269345::NZ_JACOGH010000002.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_014269345::NZ_JACOGH010000002.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACOGH010000002.1All displayed genes belong to this local TCS context.
Neighborhood span173 799-175 727 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 799 nt175 727 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
H8K24_RS03170GCF_014269345#H8K24_RS03170
HKClassic
173 799-175 034 nt · Reverse (-)
H8K24_RS03175GCF_014269345#H8K24_RS03175
RROmpRCurrent focus
175 044-175 727 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000701665#T363_RS0113630Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1357780
Simplified PFAM architecture for RROC_1357780
PFAM domain coverage: 186 / 227 aa (81.9%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1357780
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000701665#T363_RS0113630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_014269345
AssemblyASM1426934v1 · Contighaploid
Genome composition3 672 674 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 93 · HK 44 · RR 48CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key