1 Response_reg#1
4-107 aa · 104 aa · 46.0% of protein
Raw token
Response_reg:4:0.00000994:107:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HUU89_RS13905
Response regulator LytTR family
Faecalibacillus sp. H12 · GCF_013361255
ClassRRTypeLytTRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013361255#HUU89_RS13905Stable P2CS identifier used across views.
GenomeGCF_013361255Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage196 / 226 aa (86.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 LytTR#2
128-219 aa · 92 aa · 40.7% of protein
Raw token
LytTR:128:0.000000000000425:219:96:98- Raw architecture: Response_reg:4:0.00000994:107:110:111#LytTR:128:0.000000000000425:219:96:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013361255::NZ_JABWDK010000048.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4668-5348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHUU89_13870RefSeq proteinWP_032089395.1
Context group ID
GCF_013361255::NZ_JABWDK010000048.1::G00022Context members
HUU89_RS13905
Partner locus tags
HUU89_RS13905
Partner old locus tags
HUU89_13870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_032089395.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT2SY07Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT2SY07_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHUU89_RS13905Primary locus identifier stored in the genes table.
Old locus tagHUU89_13870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABWDK010000048.1Sequence record reported by the local genomic context database.
Genomic interval4 668-5 348 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 668-5 348 ntGCF_013361255::NZ_JABWDK010000048.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013361255::NZ_JABWDK010000048.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABWDK010000048.1All displayed genes belong to this local TCS context.
Neighborhood span4 668-5 348 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 668 nt5 348 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HUU89_RS13905GCF_013361255#HUU89_RS13905
RRLytTRCurrent focus
4 668-5 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013361255#HUU89_RS13905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1428204
Simplified PFAM architecture for RROC_1428204
PFAM domain coverage: 197 / 226 aa (87.2%)
1 aa226 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[129-220]
- Domain count: 2
- Matched identifier: RROC_1428204
- Positioned domains: Response_reg 4-108 ; LytTR 129-220
Cluster members and taxonomy
Representative gene: GCF_013361255#HUU89_RS13905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 726 452 · GCF_013361255
AssemblyASM1336125v1 · Scaffoldhaploid
Genome composition2 806 098 bp · 30,0% GCFaecalibacillus sp. H12
Signal transduction countsGenes 54 · HK 20 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key