1 Response_reg#1
5-110 aa · 106 aa · 47.7% of protein
Raw token
Response_reg:5:2.33e-31:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HUU89_RS02050
Response regulator OmpR family
Faecalibacillus sp. H12 · GCF_013361255
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013361255#HUU89_RS02050Stable P2CS identifier used across views.
GenomeGCF_013361255Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Coprobacillaceae; Faecalibacillus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 222 aa (80.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-217 aa · 73 aa · 32.9% of protein
Raw token
Trans_reg_C:145:1.16e-28:217:76:77- Raw architecture: Response_reg:5:2.33e-31:110:108:111#Trans_reg_C:145:1.16e-28:217:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013361255::NZ_JABWDK010000001.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span346330-348968Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHUU89_02050RefSeq proteinWP_175300873.1
Context group ID
GCF_013361255::NZ_JABWDK010000001.1::G00007Context members
HUU89_RS02050HUU89_RS02055
Partner locus tags
HUU89_RS02050HUU89_RS02055
Partner old locus tags
HUU89_02050HUU89_02055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_175300873.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHUU89_RS02050Primary locus identifier stored in the genes table.
Old locus tagHUU89_02050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JABWDK010000001.1Sequence record reported by the local genomic context database.
Genomic interval346 330-346 998 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span346 330-348 968 ntGCF_013361255::NZ_JABWDK010000001.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013361255::NZ_JABWDK010000001.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JABWDK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span346 330-348 968 nt2 639 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
346 330 nt348 968 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HUU89_RS02050GCF_013361255#HUU89_RS02050
RROmpRCurrent focus
346 330-346 998 nt · Forward (+)
HUU89_RS02055GCF_013361255#HUU89_RS02055
HKClassic
346 995-348 968 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013361255#HUU89_RS02050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1651815
Simplified PFAM architecture for RROC_1651815
PFAM domain coverage: 177 / 222 aa (79.7%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-109] | Trans_reg_C[145-216]
- Domain count: 2
- Matched identifier: RROC_1651815
- Positioned domains: Response_reg 5-109 ; Trans_reg_C 145-216
Cluster members and taxonomy
Representative gene: GCF_013361255#HUU89_RS02050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 726 452 · GCF_013361255
AssemblyASM1336125v1 · Scaffoldhaploid
Genome composition2 806 098 bp · 30,0% GCFaecalibacillus sp. H12
Signal transduction countsGenes 54 · HK 20 · RR 33CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyCoprobacillaceaeGenusFaecalibacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Coprobacillaceae7Faecalibacillus
Related genes
Preview from the same derived genome key