1 Response_reg#1
9-121 aa · 113 aa · 43.3% of protein
Raw token
Response_reg:9:6.59e-32:121:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A04_RS02370
Response regulator OmpR family
Agathobacter rectalis · GCF_013303785
ClassRRTypeOmpRLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013303785#G5A04_RS02370Stable P2CS identifier used across views.
GenomeGCF_013303785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 261 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
190-259 aa · 70 aa · 26.8% of protein
Raw token
Trans_reg_C:190:5.1e-28:259:71:77- Raw architecture: Response_reg:9:6.59e-32:121:113:111#Trans_reg_C:190:5.1e-28:259:71:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013303785::NZ_JAAISB010000002.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149765-150550Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A04_02380RefSeq proteinWP_173848632.1
Context group ID
GCF_013303785::NZ_JAAISB010000002.1::G00022Context members
G5A04_RS02370
Partner locus tags
G5A04_RS02370
Partner old locus tags
G5A04_02380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173848632.1Primary protein accession used for annex mappings.
UniProt accessionA0AAW4WMN6Primary UniProt accession resolved in the annex database.
UniProt IDA0AAW4WMN6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A04_RS02370Primary locus identifier stored in the genes table.
Old locus tagG5A04_02380Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISB010000002.1Sequence record reported by the local genomic context database.
Genomic interval149 765-150 550 nt786 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span149 765-150 550 ntGCF_013303785::NZ_JAAISB010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303785::NZ_JAAISB010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISB010000002.1All displayed genes belong to this local TCS context.
Neighborhood span149 765-150 550 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 765 nt150 550 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A04_RS02370GCF_013303785#G5A04_RS02370
RROmpRCurrent focus
149 765-150 550 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303785#G5A04_RS02370The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0650083
Simplified PFAM architecture for RROC_0650083
PFAM domain coverage: 183 / 261 aa (70.1%)
1 aa261 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[9-120] | Trans_reg_C[189-259]
- Domain count: 2
- Matched identifier: RROC_0650083
- Positioned domains: Response_reg 9-120 ; Trans_reg_C 189-259
Cluster members and taxonomy
Representative gene: GCF_013303785#G5A04_RS02370
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303785
AssemblyASM1330378v1 · Contighaploid
Genome composition3 584 911 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 36 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key