1 HisKA#1
119-185 aa · 67 aa · 19.8% of protein
Raw token
HisKA:119:0.0000000000306:185:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A04_RS00485
Histidine kinase, Classic
Agathobacter rectalis · GCF_013303785
ClassHKTypeClassicLength338 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303785#G5A04_RS00485Stable P2CS identifier used across views.
GenomeGCF_013303785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length338 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 338 aa (49.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa338 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-336 aa · 100 aa · 29.6% of protein
Raw token
HATPase_c:237:2.13e-25:336:101:109- Raw architecture: HisKA:119:0.0000000000306:185:67:64#HATPase_c:237:2.13e-25:336:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303785::NZ_JAAISB010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span107620-109304Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A04_00495RefSeq proteinWP_025577697.1
Context group ID
GCF_013303785::NZ_JAAISB010000001.1::G00011Context members
G5A04_RS00480G5A04_RS00485
Partner locus tags
G5A04_RS00480G5A04_RS00485
Partner old locus tags
G5A04_00490G5A04_00495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_025577697.1Primary protein accession used for annex mappings.
UniProt accessionA0A414QUI2Primary UniProt accession resolved in the annex database.
UniProt IDA0A414QUI2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A04_RS00485Primary locus identifier stored in the genes table.
Old locus tagG5A04_00495Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISB010000001.1Sequence record reported by the local genomic context database.
Genomic interval108 288-109 304 nt1 017 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span107 620-109 304 ntGCF_013303785::NZ_JAAISB010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303785::NZ_JAAISB010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span107 620-109 304 nt1 685 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
107 620 nt109 304 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A04_RS00480GCF_013303785#G5A04_RS00480
RROmpR
107 620-108 285 nt · Forward (+)
G5A04_RS00485GCF_013303785#G5A04_RS00485
HKClassicCurrent focus
108 288-109 304 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0104450Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2842084
Simplified PFAM architecture for HKOC_2842084
PFAM domain coverage: 166 / 338 aa (49.1%)
1 aa338 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[121-185] | HATPase_c[236-336]
- Domain count: 2
- Matched identifier: HKOC_2842084
- Positioned domains: HisKA 121-185 ; HATPase_c 236-336
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0104450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303785
AssemblyASM1330378v1 · Contighaploid
Genome composition3 584 911 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 36 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key