1 HAMP#1
173-239 aa · 67 aa · 14.1% of protein
Raw token
HAMP:173:1.88e-16:239:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4926_RS08180
Histidine kinase, Classic
Anaerostipes hadrus · GCF_013302475
ClassHKTypeClassicLength475 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302475#G4926_RS08180Stable P2CS identifier used across views.
GenomeGCF_013302475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length475 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage228 / 475 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa475 aa
Domain-by-domain annotation3 items
2 HisKA#2
251-303 aa · 53 aa · 11.2% of protein
Raw token
HisKA:251:0.00000000021:303:53:643 HATPase_c#3
360-467 aa · 108 aa · 22.7% of protein
Raw token
HATPase_c:360:1.89e-30:467:108:109- Raw architecture: HAMP:173:1.88e-16:239:67:69#HisKA:251:0.00000000021:303:53:64#HATPase_c:360:1.89e-30:467:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302475::NZ_JAAIPZ010000013.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span77656-79739Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4926_08230RefSeq proteinWP_173754925.1
Context group ID
GCF_013302475::NZ_JAAIPZ010000013.1::G00002Context members
G4926_RS08175G4926_RS08180
Partner locus tags
G4926_RS08175G4926_RS08180
Partner old locus tags
G4926_08225G4926_08230
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173754925.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4926_RS08180Primary locus identifier stored in the genes table.
Old locus tagG4926_08230Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPZ010000013.1Sequence record reported by the local genomic context database.
Genomic interval78 312-79 739 nt1 428 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span77 656-79 739 ntGCF_013302475::NZ_JAAIPZ010000013.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302475::NZ_JAAIPZ010000013.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPZ010000013.1All displayed genes belong to this local TCS context.
Neighborhood span77 656-79 739 nt2 084 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
77 656 nt79 739 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4926_RS08175GCF_013302475#G4926_RS08175
RROmpR
77 656-78 315 nt · Forward (+)
G4926_RS08180GCF_013302475#G4926_RS08180
HKClassicCurrent focus
78 312-79 739 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302475#G4926_RS08180The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1667912
Simplified PFAM architecture for HKOC_1667912
PFAM domain coverage: 212 / 475 aa (44.6%)
1 aa475 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[187-238] | HisKA[251-303] | HATPase_c[360-466]
- Domain count: 3
- Matched identifier: HKOC_1667912
- Positioned domains: HAMP 187-238 ; HisKA 251-303 ; HATPase_c 360-466
Cluster members and taxonomy
Representative gene: GCF_013302475#G4926_RS08180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302475
AssemblyASM1330247v1 · Contighaploid
Genome composition2 982 760 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key