1 Response_reg#1
3-109 aa · 107 aa · 45.0% of protein
Raw token
Response_reg:3:0.00000000000014:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4926_RS00905
Response regulator LytTR family
Anaerostipes hadrus · GCF_013302475
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302475#G4926_RS00905Stable P2CS identifier used across views.
GenomeGCF_013302475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 238 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:9.37e-19:229:98:98- Raw architecture: Response_reg:3:0.00000000000014:109:111:111#LytTR:138:9.37e-19:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302475::NZ_JAAIPZ010000001.1::G00012
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span195700-196416Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4926_00920RefSeq proteinWP_173754587.1
Context group ID
GCF_013302475::NZ_JAAIPZ010000001.1::G00012Context members
G4926_RS00905
Partner locus tags
G4926_RS00905
Partner old locus tags
G4926_00920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173754587.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4926_RS00905Primary locus identifier stored in the genes table.
Old locus tagG4926_00920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval195 700-196 416 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span195 700-196 416 ntGCF_013302475::NZ_JAAIPZ010000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302475::NZ_JAAIPZ010000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span195 700-196 416 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
195 700 nt196 416 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4926_RS00905GCF_013302475#G4926_RS00905
RRLytTRCurrent focus
195 700-196 416 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302475#G4926_RS00905The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0944410
Simplified PFAM architecture for RROC_0944410
PFAM domain coverage: 203 / 238 aa (85.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0944410
- Positioned domains: Response_reg 3-115 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_013302475#G4926_RS00905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302475
AssemblyASM1330247v1 · Contighaploid
Genome composition2 982 760 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key