1 SBP_bac_3#1
44-260 aa · 217 aa · 28.0% of protein
Raw token
SBP_bac_3:44:1.6e-32:260:227:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4926_RS00440
Histidine kinase, Classic
Anaerostipes hadrus · GCF_013302475
ClassHKTypeClassicLength776 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302475#G4926_RS00440Stable P2CS identifier used across views.
GenomeGCF_013302475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_c
Protein length776 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage574 / 776 aa (74.0%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa776 aa
Domain-by-domain annotation4 items
2 SBP_bac_3#2
282-486 aa · 205 aa · 26.4% of protein
Raw token
SBP_bac_3:282:0.0000000000000941:486:220:2243 HisKA#3
571-639 aa · 69 aa · 8.9% of protein
Raw token
HisKA:571:1.43e-18:639:69:644 HATPase_c#4
685-767 aa · 83 aa · 10.7% of protein
Raw token
HATPase_c:685:0.0000000000000148:767:83:109- Raw architecture: SBP_bac_3:44:1.6e-32:260:227:224#SBP_bac_3:282:0.0000000000000941:486:220:224#HisKA:571:1.43e-18:639:69:64#HATPase_c:685:0.0000000000000148:767:83:109
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302475::NZ_JAAIPZ010000001.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span88495-91413Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4926_00445RefSeq proteinWP_173754563.1
Context group ID
GCF_013302475::NZ_JAAIPZ010000001.1::G00010Context members
G4926_RS00440G4926_RS00450
Partner locus tags
G4926_RS00440G4926_RS00450
Partner old locus tags
G4926_00445G4926_00455
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173754563.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4926_RS00440Primary locus identifier stored in the genes table.
Old locus tagG4926_00445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval88 495-90 825 nt2 331 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span88 495-91 413 ntGCF_013302475::NZ_JAAIPZ010000001.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302475::NZ_JAAIPZ010000001.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span88 495-91 413 nt2 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
88 495 nt91 413 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4926_RS00440GCF_013302475#G4926_RS00440
HKClassicCurrent focus
88 495-90 825 nt · Forward (+)
G4926_RS00450GCF_013302475#G4926_RS00450
RRCheY
90 985-91 413 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302475#G4926_RS00440The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0605102
Simplified PFAM architecture for HKOC_0605102
PFAM domain coverage: 368 / 776 aa (47.4%)
1 aa776 aa
SBP_bac_3HisKAHATPase_c
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c
- Raw architecture: SBP_bac_3[45-260] | HisKA[571-639] | HATPase_c[686-768]
- Domain count: 3
- Matched identifier: HKOC_0605102
- Positioned domains: SBP_bac_3 45-260 ; HisKA 571-639 ; HATPase_c 686-768
Cluster members and taxonomy
Representative gene: GCF_013302475#G4926_RS00440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302475
AssemblyASM1330247v1 · Contighaploid
Genome composition2 982 760 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 27 · RR 26CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key