1 Response_reg#1
6-108 aa · 103 aa · 43.5% of protein
Raw token
Response_reg:6:1.01e-21:108:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A19_RS02510
Response regulator LytTR family
Blautia faecis · GCF_013302415
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302415#G5A19_RS02510Stable P2CS identifier used across views.
GenomeGCF_013302415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage195 / 237 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
137-228 aa · 92 aa · 38.8% of protein
Raw token
LytTR:137:3.09e-21:228:97:98- Raw architecture: Response_reg:6:1.01e-21:108:106:111#LytTR:137:3.09e-21:228:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302415::NZ_JAAIPV010000003.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span149116-149829Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A19_02505RefSeq proteinWP_173773115.1
Context group ID
GCF_013302415::NZ_JAAIPV010000003.1::G00043Context members
G5A19_RS02510
Partner locus tags
G5A19_RS02510
Partner old locus tags
G5A19_02505
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173773115.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A19_RS02510Primary locus identifier stored in the genes table.
Old locus tagG5A19_02505Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPV010000003.1Sequence record reported by the local genomic context database.
Genomic interval149 116-149 829 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span149 116-149 829 ntGCF_013302415::NZ_JAAIPV010000003.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302415::NZ_JAAIPV010000003.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPV010000003.1All displayed genes belong to this local TCS context.
Neighborhood span149 116-149 829 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
149 116 nt149 829 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A19_RS02510GCF_013302415#G5A19_RS02510
RRLytTRCurrent focus
149 116-149 829 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302415#G5A19_RS02510The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971870
Simplified PFAM architecture for RROC_0971870
PFAM domain coverage: 195 / 237 aa (82.3%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-108] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0971870
- Positioned domains: Response_reg 5-108 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_013302415#G5A19_RS02510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302415
AssemblyASM1330241v1 · Contighaploid
Genome composition4 177 763 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 126 · HK 64 · RR 60CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key