1 Response_reg#1
4-113 aa · 110 aa · 48.2% of protein
Raw token
Response_reg:4:1.91e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4462_RS08530
Response regulator OmpR family
Blautia wexlerae · GCF_013301725
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301725#G4462_RS08530Stable P2CS identifier used across views.
GenomeGCF_013301725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 228 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-224 aa · 78 aa · 34.2% of protein
Raw token
Trans_reg_C:147:5.37e-30:224:78:77- Raw architecture: Response_reg:4:1.91e-28:113:111:111#Trans_reg_C:147:5.37e-30:224:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301725::NZ_JAAIOV010000023.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span51399-53131Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4462_08540RefSeq proteinWP_008705965.1
Context group ID
GCF_013301725::NZ_JAAIOV010000023.1::G00021Context members
G4462_RS08530G4462_RS08535
Partner locus tags
G4462_RS08530G4462_RS08535
Partner old locus tags
G4462_08540G4462_08545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008705965.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7GP46Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7GP46_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4462_RS08530Primary locus identifier stored in the genes table.
Old locus tagG4462_08540Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOV010000023.1Sequence record reported by the local genomic context database.
Genomic interval51 399-52 085 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 399-53 131 ntGCF_013301725::NZ_JAAIOV010000023.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301725::NZ_JAAIOV010000023.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOV010000023.1All displayed genes belong to this local TCS context.
Neighborhood span51 399-53 131 nt1 733 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 399 nt53 131 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4462_RS08530GCF_013301725#G4462_RS08530
RROmpRCurrent focus
51 399-52 085 nt · Forward (+)
G4462_RS08535GCF_013301725#G4462_RS08535
HKClassic
52 094-53 131 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS0121625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1304983
Simplified PFAM architecture for RROC_1304983
PFAM domain coverage: 185 / 228 aa (81.1%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1304983
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS0121625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301725
AssemblyASM1330172v1 · Contighaploid
Genome composition4 105 799 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key