1 GGDEF#1
136-276 aa · 141 aa · 21.4% of protein
Raw token
GGDEF:136:4.97e-39:276:153:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4462_RS05920
Response regulator, RpfG family
Blautia wexlerae · GCF_013301725
ClassRRTypeRpfGLength659 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301725#G4462_RS05920Stable P2CS identifier used across views.
GenomeGCF_013301725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
GGDEFResponse_regHD
Protein length659 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage354 / 659 aa (53.7%)Merged over positioned domains only.
Domain description1 GGDEF,1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa659 aa
Domain-by-domain annotation3 items
2 Response_reg#2
304-415 aa · 112 aa · 17.0% of protein
Raw token
Response_reg:304:5.52e-30:415:113:1113 HD#3
496-596 aa · 101 aa · 15.3% of protein
Raw token
HD:496:0.00000000000399:596:101:110- Raw architecture: GGDEF:136:4.97e-39:276:153:160#Response_reg:304:5.52e-30:415:113:111#HD:496:0.00000000000399:596:101:110
- Domain description: 1 GGDEF,1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301725::NZ_JAAIOV010000014.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span71858-73837Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4462_05935RefSeq proteinWP_173684461.1
Context group ID
GCF_013301725::NZ_JAAIOV010000014.1::G00010Context members
G4462_RS05920
Partner locus tags
G4462_RS05920
Partner old locus tags
G4462_05935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173684461.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4462_RS05920Primary locus identifier stored in the genes table.
Old locus tagG4462_05935Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOV010000014.1Sequence record reported by the local genomic context database.
Genomic interval71 858-73 837 nt1 980 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span71 858-73 837 ntGCF_013301725::NZ_JAAIOV010000014.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301725::NZ_JAAIOV010000014.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOV010000014.1All displayed genes belong to this local TCS context.
Neighborhood span71 858-73 837 nt1 980 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
71 858 nt73 837 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4462_RS05920GCF_013301725#G4462_RS05920
RRRpfGCurrent focus
71 858-73 837 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299815#G4455_RS06015Use this link to inspect the representative gene detail.
PFAM architectureGGDEF + Response_reg + HD_53 domains in the representative PFAM annotation.
PFAM architecture for RROC_0034993
Simplified PFAM architecture for RROC_0034993
PFAM domain coverage: 387 / 659 aa (58.7%)
1 aa659 aa
GGDEFResponse_regHD_5
- Simplified architecture: GGDEF + Response_reg + HD_5
- Raw architecture: GGDEF[136-278] | Response_reg[304-415] | HD_5[484-615]
- Domain count: 3
- Matched identifier: RROC_0034993
- Positioned domains: GGDEF 136-278 ; Response_reg 304-415 ; HD_5 484-615
Cluster members and taxonomy
Representative gene: GCF_013299815#G4455_RS06015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301725
AssemblyASM1330172v1 · Contighaploid
Genome composition4 105 799 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key