1 Response_reg#1
3-110 aa · 108 aa · 43.4% of protein
Raw token
Response_reg:3:1.87e-24:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4462_RS00500
Response regulator, unclassified
Blautia wexlerae · GCF_013301725
ClassRRTypeunclassifiedLength249 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301725#G4462_RS00500Stable P2CS identifier used across views.
GenomeGCF_013301725Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length249 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage139 / 249 aa (55.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa249 aa
Domain-by-domain annotation2 items
2 HTH_AraC#2
214-244 aa · 31 aa · 12.4% of protein
Raw token
HTH_AraC:214:0.00000105:244:31:42- Raw architecture: Response_reg:3:1.87e-24:110:108:111#HTH_AraC:214:0.00000105:244:31:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301725::NZ_JAAIOV010000001.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span111273-113908Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4462_00500RefSeq proteinWP_055149581.1
Context group ID
GCF_013301725::NZ_JAAIOV010000001.1::G00017Context members
G4462_RS00495G4462_RS00500
Partner locus tags
G4462_RS00495G4462_RS00500
Partner old locus tags
G4462_00495G4462_00500
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055149581.1Primary protein accession used for annex mappings.
UniProt accessionA0A173YM71Primary UniProt accession resolved in the annex database.
UniProt IDA0A173YM71_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4462_RS00500Primary locus identifier stored in the genes table.
Old locus tagG4462_00500Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOV010000001.1Sequence record reported by the local genomic context database.
Genomic interval113 159-113 908 nt750 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span111 273-113 908 ntGCF_013301725::NZ_JAAIOV010000001.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301725::NZ_JAAIOV010000001.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span111 273-113 908 nt2 636 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
111 273 nt113 908 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4462_RS00495GCF_013301725#G4462_RS00495
HKClassic
111 273-113 117 nt · Forward (+)
G4462_RS00500GCF_013301725#G4462_RS00500
RRunclassifiedCurrent focus
113 159-113 908 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404735#ARA71_RS03390Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0733089
Simplified PFAM architecture for RROC_0733089
PFAM domain coverage: 189 / 249 aa (75.9%)
1 aa249 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-113] | HTH_18[167-244]
- Domain count: 2
- Matched identifier: RROC_0733089
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; HTH_18 167-244 ; HTH_18 167-244
Cluster members and taxonomy
Representative gene: GCF_001404735#ARA71_RS03390
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013301725
AssemblyASM1330172v1 · Contighaploid
Genome composition4 105 799 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 125 · HK 62 · RR 62CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key