1 SBP_bac_3#1
43-259 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:43:4.31e-27:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS08090
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301525
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013301525#G4478_RS08090Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 952 aa (75.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.2% of protein
Raw token
SBP_bac_3:281:2e-18:482:221:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:6.11e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:5.62e-27:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:7.13e-29:945:117:111- Raw architecture: SBP_bac_3:43:4.31e-27:259:229:224#SBP_bac_3:281:2e-18:482:221:224#HisKA:577:6.11e-18:642:66:64#HATPase_c:691:5.62e-27:808:118:109#Response_reg:829:7.13e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013301525::NZ_JAAIOL010000010.1::G00001
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span25879-32760Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_08085RefSeq proteinWP_330586203.1
Context group ID
GCF_013301525::NZ_JAAIOL010000010.1::G00001Context members
G4478_RS08080G4478_RS08090G4478_RS08095
Partner locus tags
G4478_RS08080G4478_RS08090G4478_RS08095
Partner old locus tags
G4478_08075G4478_08085G4478_08090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330586203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS08090Primary locus identifier stored in the genes table.
Old locus tagG4478_08085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000010.1Sequence record reported by the local genomic context database.
Genomic interval27 764-30 592 nt2 829 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span25 879-32 760 ntGCF_013301525::NZ_JAAIOL010000010.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000010.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000010.1All displayed genes belong to this local TCS context.
Neighborhood span25 879-32 760 nt6 882 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
25 879 nt32 760 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4478_RS08080GCF_013301525#G4478_RS08080
RRRpfG
25 879-27 369 nt · Forward (+)
G4478_RS08090GCF_013301525#G4478_RS08090
HKHybridCurrent focus
27 764-30 592 nt · Forward (+)
G4478_RS08095GCF_013301525#G4478_RS08095
HKHybrid
30 688-32 760 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09510Use this link to inspect the representative gene detail.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324798
Simplified PFAM architecture for HKOC_0324798
PFAM domain coverage: 498 / 952 aa (52.3%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0324798
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key