1 SBP_bac_3#1
43-259 aa · 217 aa · 22.8% of protein
Raw token
SBP_bac_3:43:4.31e-27:259:229:224P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4366_RS09510
Histidine kinase, Hybrid
Coprococcus comes · GCF_013299755
ClassHKTypeHybridLength952 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013299755#G4366_RS09510Stable P2CS identifier used across views.
GenomeGCF_013299755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
SBP_bac_3HisKAHATPase_cResponse_reg
Protein length952 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage720 / 952 aa (75.6%)Merged over positioned domains only.
Domain description2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa952 aa
Domain-by-domain annotation5 items
2 SBP_bac_3#2
281-482 aa · 202 aa · 21.2% of protein
Raw token
SBP_bac_3:281:2e-18:482:221:2243 HisKA#3
577-642 aa · 66 aa · 6.9% of protein
Raw token
HisKA:577:6.11e-18:642:66:644 HATPase_c#4
691-808 aa · 118 aa · 12.4% of protein
Raw token
HATPase_c:691:5.62e-27:808:118:1095 Response_reg#5
829-945 aa · 117 aa · 12.3% of protein
Raw token
Response_reg:829:7.13e-29:945:117:111- Raw architecture: SBP_bac_3:43:4.31e-27:259:229:224#SBP_bac_3:281:2e-18:482:221:224#HisKA:577:6.11e-18:642:66:64#HATPase_c:691:5.62e-27:808:118:109#Response_reg:829:7.13e-29:945:117:111
- Domain description: 2 SBP_bac_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013299755::NZ_JAAIMN010000011.1::G00004
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span60831-67712Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4366_09530RefSeq proteinWP_173690399.1
Context group ID
GCF_013299755::NZ_JAAIMN010000011.1::G00004Context members
G4366_RS09505G4366_RS09510G4366_RS09520
Partner locus tags
G4366_RS09505G4366_RS09510G4366_RS09520
Partner old locus tags
G4366_09525G4366_09530G4366_09540
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690399.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4366_RS09510Primary locus identifier stored in the genes table.
Old locus tagG4366_09530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMN010000011.1Sequence record reported by the local genomic context database.
Genomic interval62 999-65 857 nt2 859 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 831-67 712 ntGCF_013299755::NZ_JAAIMN010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299755::NZ_JAAIMN010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMN010000011.1All displayed genes belong to this local TCS context.
Neighborhood span60 831-67 712 nt6 882 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 831 nt67 712 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4366_RS09505GCF_013299755#G4366_RS09505
HKHybrid
60 831-62 903 nt · Reverse (-)
G4366_RS09510GCF_013299755#G4366_RS09510
HKHybridCurrent focus
62 999-65 857 nt · Reverse (-)
G4366_RS09520GCF_013299755#G4366_RS09520
RRRpfG
66 222-67 712 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09510The current gene is the representative for this cluster.
PFAM architectureSBP_bac_3 + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0324798
Simplified PFAM architecture for HKOC_0324798
PFAM domain coverage: 498 / 952 aa (52.3%)
1 aa952 aa
SBP_bac_3HisKAHATPase_cResponse_reg
- Simplified architecture: SBP_bac_3 + HisKA + HATPase_c + Response_reg
- Raw architecture: SBP_bac_3[51-249] | HisKA[577-642] | HATPase_c[692-807] | Response_reg[829-945]
- Domain count: 4
- Matched identifier: HKOC_0324798
- Positioned domains: SBP_bac_3 51-249 ; HisKA 577-642 ; HATPase_c 692-807 ; Response_reg 829-945
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013299755
AssemblyASM1329975v1 · Contighaploid
Genome composition3 230 682 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key