1 HisKA#1
88-154 aa · 67 aa · 21.9% of protein
Raw token
HisKA:88:0.000000000204:154:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS01955
Histidine kinase, Classic
Coprococcus comes · GCF_013301525
ClassHKTypeClassicLength306 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS01955Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length306 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 306 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa306 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
200-306 aa · 107 aa · 35.0% of protein
Raw token
HATPase_c:200:3.48e-17:306:108:109- Raw architecture: HisKA:88:0.000000000204:154:67:64#HATPase_c:200:3.48e-17:306:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000002.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span19971-21546Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_01945RefSeq proteinWP_243863473.1
Context group ID
GCF_013301525::NZ_JAAIOL010000002.1::G00033Context members
G4478_RS01950G4478_RS01955
Partner locus tags
G4478_RS01950G4478_RS01955
Partner old locus tags
G4478_01940G4478_01945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243863473.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS01955Primary locus identifier stored in the genes table.
Old locus tagG4478_01945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000002.1Sequence record reported by the local genomic context database.
Genomic interval20 626-21 546 nt921 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span19 971-21 546 ntGCF_013301525::NZ_JAAIOL010000002.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000002.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000002.1All displayed genes belong to this local TCS context.
Neighborhood span19 971-21 546 nt1 576 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 971 nt21 546 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS01950GCF_013301525#G4478_RS01950
RROmpR
19 971-20 624 nt · Forward (+)
G4478_RS01955GCF_013301525#G4478_RS01955
HKClassicCurrent focus
20 626-21 546 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS01940Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2881528
Simplified PFAM architecture for HKOC_2881528
PFAM domain coverage: 159 / 306 aa (52.0%)
1 aa306 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[88-154] | HATPase_c[200-291]
- Domain count: 2
- Matched identifier: HKOC_2881528
- Positioned domains: HisKA 88-154 ; HATPase_c 200-291
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS01940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key