1 HAMP#1
138-204 aa · 67 aa · 15.2% of protein
Raw token
HAMP:138:0.000000106:204:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS09775
Histidine kinase, Classic
Coprococcus comes · GCF_013301475
ClassHKTypeClassicLength440 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS09775Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length440 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 440 aa (54.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa440 aa
Domain-by-domain annotation3 items
2 HisKA#2
219-288 aa · 70 aa · 15.9% of protein
Raw token
HisKA:219:0.00000000165:288:70:643 HATPase_c#3
334-435 aa · 102 aa · 23.2% of protein
Raw token
HATPase_c:334:1.43e-23:435:103:109- Raw architecture: HAMP:138:0.000000106:204:67:69#HisKA:219:0.00000000165:288:70:64#HATPase_c:334:1.43e-23:435:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000012.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span78142-80126Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_09815RefSeq proteinWP_055156874.1
Context group ID
GCF_013301475::NZ_JAAIOK010000012.1::G00009Context members
G4393_RS09770G4393_RS09775
Partner locus tags
G4393_RS09770G4393_RS09775
Partner old locus tags
G4393_09810G4393_09815
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055156874.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7GJ50Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7GJ50_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS09775Primary locus identifier stored in the genes table.
Old locus tagG4393_09815Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000012.1Sequence record reported by the local genomic context database.
Genomic interval78 804-80 126 nt1 323 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span78 142-80 126 ntGCF_013301475::NZ_JAAIOK010000012.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000012.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span78 142-80 126 nt1 985 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
78 142 nt80 126 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS09770GCF_013301475#G4393_RS09770
RROmpR
78 142-78 816 nt · Forward (+)
G4393_RS09775GCF_013301475#G4393_RS09775
HKClassicCurrent focus
78 804-80 126 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405415#ARA37_RS04210Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2072695
Simplified PFAM architecture for HKOC_2072695
PFAM domain coverage: 217 / 440 aa (49.3%)
1 aa440 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[159-204] | HisKA[220-287] | HATPase_c[334-436]
- Domain count: 3
- Matched identifier: HKOC_2072695
- Positioned domains: HAMP 159-204 ; HisKA 220-287 ; HATPase_c 334-436
Cluster members and taxonomy
Representative gene: GCF_001405415#ARA37_RS04210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key