1 HisKA#1
160-218 aa · 59 aa · 15.3% of protein
Raw token
HisKA:160:0.00000026:218:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS01020
Histidine kinase, Classic
Coprococcus comes · GCF_013301475
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS01020Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage165 / 386 aa (42.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
264-369 aa · 106 aa · 27.5% of protein
Raw token
HATPase_c:264:7.04e-20:369:108:109- Raw architecture: HisKA:160:0.00000026:218:59:64#HATPase_c:264:7.04e-20:369:108:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000001.1::G00019
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span223126-224986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_01025RefSeq proteinWP_173689831.1
Context group ID
GCF_013301475::NZ_JAAIOK010000001.1::G00019Context members
G4393_RS01015G4393_RS01020
Partner locus tags
G4393_RS01015G4393_RS01020
Partner old locus tags
G4393_01020G4393_01025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173689831.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS01020Primary locus identifier stored in the genes table.
Old locus tagG4393_01025Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000001.1Sequence record reported by the local genomic context database.
Genomic interval223 826-224 986 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span223 126-224 986 ntGCF_013301475::NZ_JAAIOK010000001.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000001.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span223 126-224 986 nt1 861 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
223 126 nt224 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS01015GCF_013301475#G4393_RS01015
RROmpR
223 126-223 839 nt · Forward (+)
G4393_RS01020GCF_013301475#G4393_RS01020
HKClassicCurrent focus
223 826-224 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS00820Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2559851
Simplified PFAM architecture for HKOC_2559851
PFAM domain coverage: 167 / 386 aa (43.3%)
1 aa386 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[157-218] | HATPase_c[266-370]
- Domain count: 2
- Matched identifier: HKOC_2559851
- Positioned domains: HisKA 157-218 ; HATPase_c 266-370
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS00820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key