1 dCache_1#1
167-272 aa · 106 aa · 18.0% of protein
Raw token
dCache_1:167:0.0000573:272:106:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS00805
Histidine kinase, Classic
Blautia glucerasea · GCF_013300845
ClassHKTypeClassicLength589 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS00805Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length589 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage356 / 589 aa (60.4%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa589 aa
Domain-by-domain annotation4 items
2 HAMP#2
302-371 aa · 70 aa · 11.9% of protein
Raw token
HAMP:302:0.0000000000496:371:70:693 His_kinase#3
386-465 aa · 80 aa · 13.6% of protein
Raw token
His_kinase:386:1.84e-28:465:80:804 HATPase_c#4
483-582 aa · 100 aa · 17.0% of protein
Raw token
HATPase_c:483:0.00000000574:582:109:109- Raw architecture: dCache_1:167:0.0000573:272:106:195#HAMP:302:0.0000000000496:371:70:69#His_kinase:386:1.84e-28:465:80:80#HATPase_c:483:0.00000000574:582:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000001.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span181667-184667Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_00795RefSeq proteinWP_173717795.1
Context group ID
GCF_013300845::NZ_JAAIUB010000001.1::G00015Context members
G5B24_RS00800G5B24_RS00805
Partner locus tags
G5B24_RS00800G5B24_RS00805
Partner old locus tags
G5B24_00790G5B24_00795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173717795.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS00805Primary locus identifier stored in the genes table.
Old locus tagG5B24_00795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000001.1Sequence record reported by the local genomic context database.
Genomic interval182 898-184 667 nt1 770 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span181 667-184 667 ntGCF_013300845::NZ_JAAIUB010000001.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000001.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000001.1All displayed genes belong to this local TCS context.
Neighborhood span181 667-184 667 nt3 001 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
181 667 nt184 667 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS00800GCF_013300845#G5B24_RS00800
RRunclassified
181 667-182 845 nt · Reverse (-)
G5B24_RS00805GCF_013300845#G5B24_RS00805
HKClassicCurrent focus
182 898-184 667 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS00805The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1116792
Simplified PFAM architecture for HKOC_1116792
PFAM domain coverage: 223 / 589 aa (37.9%)
1 aa589 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[324-370] | His_kinase[387-463] | HATPase_c[484-582]
- Domain count: 3
- Matched identifier: HKOC_1116792
- Positioned domains: HAMP 324-370 ; His_kinase 387-463 ; HATPase_c 484-582
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS00805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key