1 Response_reg#1
38-112 aa · 75 aa · 60.5% of protein
Raw token
Response_reg:38:0.0000000705:112:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS03465
Response regulator, CheY family
Blautia glucerasea · GCF_013300845
ClassRRTypeCheYLength124 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300845#G5B24_RS03465Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length124 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage75 / 124 aa (60.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa124 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:38:0.0000000705:112:80:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300845::NZ_JAAIUB010000006.1::G00063
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34098-34472Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_03445RefSeq proteinWP_173718100.1
Context group ID
GCF_013300845::NZ_JAAIUB010000006.1::G00063Context members
G5B24_RS03465
Partner locus tags
G5B24_RS03465
Partner old locus tags
G5B24_03445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718100.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS03465Primary locus identifier stored in the genes table.
Old locus tagG5B24_03445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000006.1Sequence record reported by the local genomic context database.
Genomic interval34 098-34 472 nt375 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 098-34 472 ntGCF_013300845::NZ_JAAIUB010000006.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000006.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000006.1All displayed genes belong to this local TCS context.
Neighborhood span34 098-34 472 nt375 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 098 nt34 472 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5B24_RS03465GCF_013300845#G5B24_RS03465
RRCheYCurrent focus
34 098-34 472 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS03465The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2385344
Simplified PFAM architecture for RROC_2385344
PFAM domain coverage: 96 / 124 aa (77.4%)
1 aa124 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[17-112]
- Domain count: 1
- Matched identifier: RROC_2385344
- Positioned domains: Response_reg 17-112
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS03465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key