1 Response_reg#1
4-111 aa · 108 aa · 21.4% of protein
Raw token
Response_reg:4:6.66e-30:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B27_RS01335
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300325
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300325#G5B27_RS01335Stable P2CS identifier used across views.
GenomeGCF_013300325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage179 / 505 aa (35.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
408-449 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:408:0.00000000457:449:42:423 HTH_AraC#3
470-498 aa · 29 aa · 5.7% of protein
Raw token
HTH_AraC:470:0.000000548:498:29:42- Raw architecture: Response_reg:4:6.66e-30:111:111:111#HTH_AraC:408:0.00000000457:449:42:42#HTH_AraC:470:0.000000548:498:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300325::NZ_JAAIUH010000001.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span295431-298747Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B27_01340RefSeq proteinWP_173860152.1
Context group ID
GCF_013300325::NZ_JAAIUH010000001.1::G00014Context members
G5B27_RS01330G5B27_RS01335
Partner locus tags
G5B27_RS01330G5B27_RS01335
Partner old locus tags
G5B27_01335G5B27_01340
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173860152.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B27_RS01335Primary locus identifier stored in the genes table.
Old locus tagG5B27_01340Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUH010000001.1Sequence record reported by the local genomic context database.
Genomic interval297 230-298 747 nt1 518 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span295 431-298 747 ntGCF_013300325::NZ_JAAIUH010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300325::NZ_JAAIUH010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span295 431-298 747 nt3 317 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
295 431 nt298 747 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B27_RS01330GCF_013300325#G5B27_RS01330
HKClassic
295 431-297 233 nt · Reverse (-)
G5B27_RS01335GCF_013300325#G5B27_RS01335
RRunclassifiedCurrent focus
297 230-298 747 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300325#G5B27_RS01335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152810
Simplified PFAM architecture for RROC_0152810
PFAM domain coverage: 191 / 505 aa (37.8%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[422-500]
- Domain count: 2
- Matched identifier: RROC_0152810
- Positioned domains: Response_reg 4-115 ; HTH_18 422-500
Cluster members and taxonomy
Representative gene: GCF_013300325#G5B27_RS01335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300325
AssemblyASM1330032v1 · Contighaploid
Genome composition3 807 507 bp · 46,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 99 · HK 47 · RR 48CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key