1 Response_reg#1
2-114 aa · 113 aa · 50.7% of protein
Raw token
Response_reg:2:1.09e-32:114:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B27_RS02515
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300325
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300325#G5B27_RS02515Stable P2CS identifier used across views.
GenomeGCF_013300325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 223 aa (83.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:2.55e-35:221:77:77- Raw architecture: Response_reg:2:1.09e-32:114:113:111#Trans_reg_C:148:2.55e-35:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300325::NZ_JAAIUH010000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span154502-156841Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B27_02530RefSeq proteinWP_022462258.1
Context group ID
GCF_013300325::NZ_JAAIUH010000002.1::G00022Context members
G5B27_RS02515G5B27_RS02520
Partner locus tags
G5B27_RS02515G5B27_RS02520
Partner old locus tags
G5B27_02530G5B27_02535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022462258.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LE64Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LE64_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B27_RS02515Primary locus identifier stored in the genes table.
Old locus tagG5B27_02530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUH010000002.1Sequence record reported by the local genomic context database.
Genomic interval154 502-155 173 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span154 502-156 841 ntGCF_013300325::NZ_JAAIUH010000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300325::NZ_JAAIUH010000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUH010000002.1All displayed genes belong to this local TCS context.
Neighborhood span154 502-156 841 nt2 340 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
154 502 nt156 841 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B27_RS02515GCF_013300325#G5B27_RS02515
RROmpRCurrent focus
154 502-155 173 nt · Forward (+)
G5B27_RS02520GCF_013300325#G5B27_RS02520
HKClassic
155 183-156 841 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406335#ARA47_RS07255Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1593214
Simplified PFAM architecture for RROC_1593214
PFAM domain coverage: 186 / 223 aa (83.4%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[2-113] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1593214
- Positioned domains: Response_reg 2-113 ; Response_reg 2-113 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_001406335#ARA47_RS07255
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300325
AssemblyASM1330032v1 · Contighaploid
Genome composition3 807 507 bp · 46,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 99 · HK 47 · RR 48CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key