1 HAMP#1
185-253 aa · 69 aa · 13.8% of protein
Raw token
HAMP:185:3.1e-19:253:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS13470
Histidine kinase, Classic
Dorea longicatena · GCF_013299835
ClassHKTypeClassicLength501 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS13470Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length501 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 501 aa (49.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa501 aa
Domain-by-domain annotation3 items
2 HisKA#2
279-346 aa · 68 aa · 13.6% of protein
Raw token
HisKA:279:0.00000000000000155:346:68:643 HATPase_c#3
391-501 aa · 111 aa · 22.2% of protein
Raw token
HATPase_c:391:1.79e-18:501:112:109- Raw architecture: HAMP:185:3.1e-19:253:69:69#HisKA:279:0.00000000000000155:346:68:64#HATPase_c:391:1.79e-18:501:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000025.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31333-33518Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_13475RefSeq proteinWP_055213177.1
Context group ID
GCF_013299835::NZ_JAAIMW010000025.1::G00020Context members
G4355_RS13465G4355_RS13470
Partner locus tags
G4355_RS13465G4355_RS13470
Partner old locus tags
G4355_13470G4355_13475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055213177.1Primary protein accession used for annex mappings.
UniProt accessionA0A173QZJ5Primary UniProt accession resolved in the annex database.
UniProt IDA0A173QZJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS13470Primary locus identifier stored in the genes table.
Old locus tagG4355_13475Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000025.1Sequence record reported by the local genomic context database.
Genomic interval32 013-33 518 nt1 506 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span31 333-33 518 ntGCF_013299835::NZ_JAAIMW010000025.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000025.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000025.1All displayed genes belong to this local TCS context.
Neighborhood span31 333-33 518 nt2 186 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 333 nt33 518 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS13465GCF_013299835#G4355_RS13465
RROmpR
31 333-32 016 nt · Forward (+)
G4355_RS13470GCF_013299835#G4355_RS13470
HKClassicCurrent focus
32 013-33 518 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS00785Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468948
Simplified PFAM architecture for HKOC_1468948
PFAM domain coverage: 226 / 501 aa (45.1%)
1 aa501 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[203-253] | HisKA[279-344] | HATPase_c[392-500]
- Domain count: 3
- Matched identifier: HKOC_1468948
- Positioned domains: HAMP 203-253 ; HisKA 279-344 ; HATPase_c 392-500
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS00785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key