1 Response_reg#1
3-103 aa · 101 aa · 47.0% of protein
Raw token
Response_reg:3:5.15e-26:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS01560
Response regulator NarL family
Dorea longicatena · GCF_013299835
ClassRRTypeNarLLength215 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS01560Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 215 aa (71.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
155-206 aa · 52 aa · 24.2% of protein
Raw token
HTH_LUXR:155:1.46e-20:206:52:58- Raw architecture: Response_reg:3:5.15e-26:103:101:111#HTH_LUXR:155:1.46e-20:206:52:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000002.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75972-77782Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_01565RefSeq proteinWP_173733793.1
Context group ID
GCF_013299835::NZ_JAAIMW010000002.1::G00025Context members
G4355_RS01560G4355_RS01565
Partner locus tags
G4355_RS01560G4355_RS01565
Partner old locus tags
G4355_01565G4355_01570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173733793.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS01560Primary locus identifier stored in the genes table.
Old locus tagG4355_01565Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000002.1Sequence record reported by the local genomic context database.
Genomic interval75 972-76 619 nt648 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 972-77 782 ntGCF_013299835::NZ_JAAIMW010000002.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000002.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span75 972-77 782 nt1 811 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 972 nt77 782 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS01560GCF_013299835#G4355_RS01560
RRNarLCurrent focus
75 972-76 619 nt · Reverse (-)
G4355_RS01565GCF_013299835#G4355_RS01565
HKClassic
76 616-77 782 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS01560The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1916947
Simplified PFAM architecture for RROC_1916947
PFAM domain coverage: 154 / 215 aa (71.6%)
1 aa215 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[155-206]
- Domain count: 2
- Matched identifier: RROC_1916947
- Positioned domains: Response_reg 3-104 ; GerE 155-206
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS01560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key