1 HisKA#1
476-540 aa · 65 aa · 9.3% of protein
Raw token
HisKA:476:2.74e-17:540:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS01465
Histidine kinase, Classic
Dorea longicatena · GCF_013299835
ClassHKTypeClassicLength702 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS01465Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length702 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage155 / 702 aa (22.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa702 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
593-682 aa · 90 aa · 12.8% of protein
Raw token
HATPase_c:593:0.0000000000000179:682:94:109- Raw architecture: HisKA:476:2.74e-17:540:65:64#HATPase_c:593:0.0000000000000179:682:94:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000002.1::G00024
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53010-55797Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_01470RefSeq proteinWP_416387789.1
Context group ID
GCF_013299835::NZ_JAAIMW010000002.1::G00024Context members
G4355_RS01465G4355_RS01470
Partner locus tags
G4355_RS01465G4355_RS01470
Partner old locus tags
G4355_01470G4355_01475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_416387789.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS01465Primary locus identifier stored in the genes table.
Old locus tagG4355_01470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000002.1Sequence record reported by the local genomic context database.
Genomic interval53 010-55 040 nt2 031 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span53 010-55 797 ntGCF_013299835::NZ_JAAIMW010000002.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000002.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span53 010-55 797 nt2 788 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 010 nt55 797 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS01465GCF_013299835#G4355_RS01465
HKClassicCurrent focus
53 010-55 040 nt · Reverse (-)
G4355_RS01470GCF_013299835#G4355_RS01470
RROmpR
55 090-55 797 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS01465The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0765980
Simplified PFAM architecture for HKOC_0765980
PFAM domain coverage: 158 / 702 aa (22.5%)
1 aa702 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[476-539] | HATPase_c[590-683]
- Domain count: 2
- Matched identifier: HKOC_0765980
- Positioned domains: HisKA 476-539 ; HATPase_c 590-683
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS01465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key