1 Response_reg#1
3-116 aa · 114 aa · 22.4% of protein
Raw token
Response_reg:3:5.48e-32:116:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS09045
Response regulator, unclassified
Dorea longicatena · GCF_013299835
ClassRRTypeunclassifiedLength508 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS09045Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length508 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage195 / 508 aa (38.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa508 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
414-455 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:414:0.0000258:455:42:423 HTH_AraC#3
467-505 aa · 39 aa · 7.7% of protein
Raw token
HTH_AraC:467:0.000000014:505:39:42- Raw architecture: Response_reg:3:5.48e-32:116:114:111#HTH_AraC:414:0.0000258:455:42:42#HTH_AraC:467:0.000000014:505:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span40684-43888Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_09070RefSeq proteinWP_173733587.1
Context group ID
GCF_013299835::NZ_JAAIMW010000013.1::G00006Context members
G4355_RS09045G4355_RS09050
Partner locus tags
G4355_RS09045G4355_RS09050
Partner old locus tags
G4355_09070G4355_09075
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173733587.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS09045Primary locus identifier stored in the genes table.
Old locus tagG4355_09070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000013.1Sequence record reported by the local genomic context database.
Genomic interval40 684-42 210 nt1 527 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span40 684-43 888 ntGCF_013299835::NZ_JAAIMW010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000013.1All displayed genes belong to this local TCS context.
Neighborhood span40 684-43 888 nt3 205 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
40 684 nt43 888 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS09045GCF_013299835#G4355_RS09045
RRunclassifiedCurrent focus
40 684-42 210 nt · Reverse (-)
G4355_RS09050GCF_013299835#G4355_RS09050
HKClassic
42 191-43 888 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS09045The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0149105
Simplified PFAM architecture for RROC_0149105
PFAM domain coverage: 191 / 508 aa (37.6%)
1 aa508 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-115] | HTH_18[428-505]
- Domain count: 2
- Matched identifier: RROC_0149105
- Positioned domains: Response_reg 3-115 ; HTH_18 428-505
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS09045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key