1 Response_reg#1
6-119 aa · 114 aa · 21.0% of protein
Raw token
Response_reg:6:8.16e-30:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS08040
Response regulator, unclassified
Dorea longicatena · GCF_013299835
ClassRRTypeunclassifiedLength543 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS08040Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length543 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 543 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa543 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
452-489 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:452:0.00000000037:489:38:423 HTH_AraC#3
501-538 aa · 38 aa · 7.0% of protein
Raw token
HTH_AraC:501:0.000000947:538:38:42- Raw architecture: Response_reg:6:8.16e-30:119:114:111#HTH_AraC:452:0.00000000037:489:38:42#HTH_AraC:501:0.000000947:538:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59201-62321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_08065RefSeq proteinWP_173784295.1
Context group ID
GCF_013299835::NZ_JAAIMW010000011.1::G00004Context members
G4355_RS08035G4355_RS08040
Partner locus tags
G4355_RS08035G4355_RS08040
Partner old locus tags
G4355_08060G4355_08065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173784295.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS08040Primary locus identifier stored in the genes table.
Old locus tagG4355_08065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000011.1Sequence record reported by the local genomic context database.
Genomic interval60 690-62 321 nt1 632 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 201-62 321 ntGCF_013299835::NZ_JAAIMW010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000011.1All displayed genes belong to this local TCS context.
Neighborhood span59 201-62 321 nt3 121 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 201 nt62 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS08035GCF_013299835#G4355_RS08035
HKClassic
59 201-60 616 nt · Reverse (-)
G4355_RS08040GCF_013299835#G4355_RS08040
RRunclassifiedCurrent focus
60 690-62 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS08040The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0084326
Simplified PFAM architecture for RROC_0084326
PFAM domain coverage: 193 / 543 aa (35.5%)
1 aa543 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[461-540]
- Domain count: 2
- Matched identifier: RROC_0084326
- Positioned domains: Response_reg 6-118 ; HTH_18 461-540
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS08040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key