1 HisKA#1
121-174 aa · 54 aa · 15.9% of protein
Raw token
HisKA:121:0.0000358:174:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS06385
Histidine kinase, Classic
Dorea longicatena · GCF_013299835
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS06385Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 339 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
219-332 aa · 114 aa · 33.6% of protein
Raw token
HATPase_c:219:4.81e-22:332:114:109- Raw architecture: HisKA:121:0.0000358:174:60:64#HATPase_c:219:4.81e-22:332:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000008.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span83827-85529Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_06395RefSeq proteinWP_173733364.1
Context group ID
GCF_013299835::NZ_JAAIMW010000008.1::G00040Context members
G4355_RS06385G4355_RS06390
Partner locus tags
G4355_RS06385G4355_RS06390
Partner old locus tags
G4355_06395G4355_06400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173733364.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS06385Primary locus identifier stored in the genes table.
Old locus tagG4355_06395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000008.1Sequence record reported by the local genomic context database.
Genomic interval83 827-84 846 nt1 020 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span83 827-85 529 ntGCF_013299835::NZ_JAAIMW010000008.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000008.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000008.1All displayed genes belong to this local TCS context.
Neighborhood span83 827-85 529 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
83 827 nt85 529 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS06385GCF_013299835#G4355_RS06385
HKClassicCurrent focus
83 827-84 846 nt · Reverse (-)
G4355_RS06390GCF_013299835#G4355_RS06390
RROmpR
84 843-85 529 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS06385The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840642
Simplified PFAM architecture for HKOC_2840642
PFAM domain coverage: 113 / 339 aa (33.3%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[220-332]
- Domain count: 1
- Matched identifier: HKOC_2840642
- Positioned domains: HATPase_c 220-332
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS06385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key