1 Response_reg#1
7-116 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:7:1.56e-33:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS05805
Response regulator OmpR family
Dorea longicatena · GCF_013299835
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS05805Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 237 aa (78.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-230 aa · 77 aa · 32.5% of protein
Raw token
Trans_reg_C:154:1.03e-23:230:77:77- Raw architecture: Response_reg:7:1.56e-33:116:111:111#Trans_reg_C:154:1.03e-23:230:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000007.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span85787-87639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_05820RefSeq proteinWP_006428431.1
Context group ID
GCF_013299835::NZ_JAAIMW010000007.1::G00037Context members
G4355_RS05800G4355_RS05805
Partner locus tags
G4355_RS05800G4355_RS05805
Partner old locus tags
G4355_05815G4355_05820
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428431.1Primary protein accession used for annex mappings.
UniProt accessionA6BDG7Primary UniProt accession resolved in the annex database.
UniProt IDA6BDG7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS05805Primary locus identifier stored in the genes table.
Old locus tagG4355_05820Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000007.1Sequence record reported by the local genomic context database.
Genomic interval86 926-87 639 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span85 787-87 639 ntGCF_013299835::NZ_JAAIMW010000007.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000007.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000007.1All displayed genes belong to this local TCS context.
Neighborhood span85 787-87 639 nt1 853 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
85 787 nt87 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS05800GCF_013299835#G4355_RS05800
HKClassic
85 787-86 923 nt · Forward (+)
G4355_RS05805GCF_013299835#G4355_RS05805
RROmpRCurrent focus
86 926-87 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961592
Simplified PFAM architecture for RROC_0961592
PFAM domain coverage: 187 / 237 aa (78.9%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_0961592
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key