1 Response_reg#1
5-105 aa · 101 aa · 18.4% of protein
Raw token
Response_reg:5:7.37e-31:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS05620
Response regulator, unclassified
Dorea longicatena · GCF_013299835
ClassRRTypeunclassifiedLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS05620Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage169 / 550 aa (30.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
467-497 aa · 31 aa · 5.6% of protein
Raw token
HTH_AraC:467:0.0000862:497:31:423 HTH_AraC#3
512-548 aa · 37 aa · 6.7% of protein
Raw token
HTH_AraC:512:0.00000000354:548:37:42- Raw architecture: Response_reg:5:7.37e-31:105:102:111#HTH_AraC:467:0.0000862:497:31:42#HTH_AraC:512:0.00000000354:548:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000007.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52407-55789Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_05635RefSeq proteinWP_006428465.1
Context group ID
GCF_013299835::NZ_JAAIMW010000007.1::G00035Context members
G4355_RS05620G4355_RS05625
Partner locus tags
G4355_RS05620G4355_RS05625
Partner old locus tags
G4355_05635G4355_05640
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428465.1Primary protein accession used for annex mappings.
UniProt accessionA6BDK1Primary UniProt accession resolved in the annex database.
UniProt IDA6BDK1_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS05620Primary locus identifier stored in the genes table.
Old locus tagG4355_05635Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000007.1Sequence record reported by the local genomic context database.
Genomic interval52 407-54 059 nt1 653 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 407-55 789 ntGCF_013299835::NZ_JAAIMW010000007.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000007.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000007.1All displayed genes belong to this local TCS context.
Neighborhood span52 407-55 789 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 407 nt55 789 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS05620GCF_013299835#G4355_RS05620
RRunclassifiedCurrent focus
52 407-54 059 nt · Reverse (-)
G4355_RS05625GCF_013299835#G4355_RS05625
HKClassic
54 056-55 789 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11405Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073597
Simplified PFAM architecture for RROC_0073597
PFAM domain coverage: 187 / 550 aa (34.0%)
1 aa550 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[471-548]
- Domain count: 2
- Matched identifier: RROC_0073597
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 471-548 ; HTH_18 471-548
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key