1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:3.84e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS04830
Response regulator OmpR family
Dorea longicatena · GCF_013299835
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS04830Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 240 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.5% of protein
Raw token
Trans_reg_C:156:8.49e-31:233:78:77- Raw architecture: Response_reg:6:3.84e-36:115:111:111#Trans_reg_C:156:8.49e-31:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000006.1::G00034
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span24454-26419Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_04845RefSeq proteinWP_173733075.1
Context group ID
GCF_013299835::NZ_JAAIMW010000006.1::G00034Context members
G4355_RS04830G4355_RS04835
Partner locus tags
G4355_RS04830G4355_RS04835
Partner old locus tags
G4355_04845G4355_04850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173733075.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS04830Primary locus identifier stored in the genes table.
Old locus tagG4355_04845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000006.1Sequence record reported by the local genomic context database.
Genomic interval24 454-25 176 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 454-26 419 ntGCF_013299835::NZ_JAAIMW010000006.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000006.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000006.1All displayed genes belong to this local TCS context.
Neighborhood span24 454-26 419 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 454 nt26 419 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS04830GCF_013299835#G4355_RS04830
RROmpRCurrent focus
24 454-25 176 nt · Forward (+)
G4355_RS04835GCF_013299835#G4355_RS04835
HKClassic
25 139-26 419 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299835#G4355_RS04830The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0891409
Simplified PFAM architecture for RROC_0891409
PFAM domain coverage: 188 / 240 aa (78.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0891409
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_013299835#G4355_RS04830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key