1 Response_reg#1
6-118 aa · 113 aa · 21.2% of protein
Raw token
Response_reg:6:5.27e-29:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4355_RS01425
Response regulator, unclassified
Dorea longicatena · GCF_013299835
ClassRRTypeunclassifiedLength532 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299835#G4355_RS01425Stable P2CS identifier used across views.
GenomeGCF_013299835Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length532 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage178 / 532 aa (33.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa532 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
440-474 aa · 35 aa · 6.6% of protein
Raw token
HTH_AraC:440:0.0000000123:474:35:423 HTH_AraC#3
495-524 aa · 30 aa · 5.6% of protein
Raw token
HTH_AraC:495:0.0000868:524:30:42- Raw architecture: Response_reg:6:5.27e-29:118:113:111#HTH_AraC:440:0.0000000123:474:35:42#HTH_AraC:495:0.0000868:524:30:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299835::NZ_JAAIMW010000002.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span42310-45637Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4355_01430RefSeq proteinWP_080543143.1
Context group ID
GCF_013299835::NZ_JAAIMW010000002.1::G00023Context members
G4355_RS01420G4355_RS01425
Partner locus tags
G4355_RS01420G4355_RS01425
Partner old locus tags
G4355_01425G4355_01430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_080543143.1Primary protein accession used for annex mappings.
UniProt accessionA0A845KQ68Primary UniProt accession resolved in the annex database.
UniProt IDA0A845KQ68_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4355_RS01425Primary locus identifier stored in the genes table.
Old locus tagG4355_01430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMW010000002.1Sequence record reported by the local genomic context database.
Genomic interval44 039-45 637 nt1 599 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 310-45 637 ntGCF_013299835::NZ_JAAIMW010000002.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299835::NZ_JAAIMW010000002.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMW010000002.1All displayed genes belong to this local TCS context.
Neighborhood span42 310-45 637 nt3 328 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 310 nt45 637 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4355_RS01420GCF_013299835#G4355_RS01420
HKClassic
42 310-44 049 nt · Reverse (-)
G4355_RS01425GCF_013299835#G4355_RS01425
RRunclassifiedCurrent focus
44 039-45 637 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS08970Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0107820
Simplified PFAM architecture for RROC_0107820
PFAM domain coverage: 191 / 532 aa (35.9%)
1 aa532 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-117] | HTH_18[447-525]
- Domain count: 2
- Matched identifier: RROC_0107820
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; HTH_18 447-525 ; HTH_18 447-525
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS08970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013299835
AssemblyASM1329983v1 · Contighaploid
Genome composition3 134 633 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 79 · HK 38 · RR 41CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key