1 dCache_1#1
168-278 aa · 111 aa · 19.1% of protein
Raw token
dCache_1:168:0.000000057:278:111:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS09910
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_013299825
ClassHKTypeClassicLength581 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299825#G4465_RS09910Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length581 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage369 / 581 aa (63.5%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa581 aa
Domain-by-domain annotation4 items
2 HAMP#2
296-365 aa · 70 aa · 12.0% of protein
Raw token
HAMP:296:0.0000000000000821:365:70:693 His_kinase#3
381-459 aa · 79 aa · 13.6% of protein
Raw token
His_kinase:381:3.93e-27:459:79:804 HATPase_c#4
470-578 aa · 109 aa · 18.8% of protein
Raw token
HATPase_c:470:0.0000000000000172:578:114:109- Raw architecture: dCache_1:168:0.000000057:278:111:195#HAMP:296:0.0000000000000821:365:70:69#His_kinase:381:3.93e-27:459:79:80#HATPase_c:470:0.0000000000000172:578:114:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299825::NZ_JAAIMS010000018.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span14449-17823Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_09860RefSeq proteinWP_173864316.1
Context group ID
GCF_013299825::NZ_JAAIMS010000018.1::G00008Context members
G4465_RS09905G4465_RS09910
Partner locus tags
G4465_RS09905G4465_RS09910
Partner old locus tags
G4465_09855G4465_09860
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173864316.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS09910Primary locus identifier stored in the genes table.
Old locus tagG4465_09860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000018.1Sequence record reported by the local genomic context database.
Genomic interval16 078-17 823 nt1 746 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span14 449-17 823 ntGCF_013299825::NZ_JAAIMS010000018.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000018.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000018.1All displayed genes belong to this local TCS context.
Neighborhood span14 449-17 823 nt3 375 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
14 449 nt17 823 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4465_RS09905GCF_013299825#G4465_RS09905
RRunclassified
14 449-16 053 nt · Reverse (-)
G4465_RS09910GCF_013299825#G4465_RS09910
HKClassicCurrent focus
16 078-17 823 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS09910The current gene is the representative for this cluster.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1158450
Simplified PFAM architecture for HKOC_1158450
PFAM domain coverage: 234 / 581 aa (40.3%)
1 aa581 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[313-362] | His_kinase[381-455] | HATPase_c[471-579]
- Domain count: 3
- Matched identifier: HKOC_1158450
- Positioned domains: HAMP 313-362 ; His_kinase 381-455 ; HATPase_c 471-579
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS09910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key