1 Response_reg#1
16-126 aa · 111 aa · 21.5% of protein
Raw token
Response_reg:16:2.36e-29:126:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4465_RS02720
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_013299825
ClassRRTypeunclassifiedLength517 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013299825#G4465_RS02720Stable P2CS identifier used across views.
GenomeGCF_013299825Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length517 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 517 aa (36.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa517 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
422-463 aa · 42 aa · 8.1% of protein
Raw token
HTH_AraC:422:0.000000183:463:42:423 HTH_AraC#3
476-512 aa · 37 aa · 7.2% of protein
Raw token
HTH_AraC:476:0.00000000533:512:37:42- Raw architecture: Response_reg:16:2.36e-29:126:111:111#HTH_AraC:422:0.000000183:463:42:42#HTH_AraC:476:0.00000000533:512:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013299825::NZ_JAAIMS010000003.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span92433-95710Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4465_02725RefSeq proteinWP_173863857.1
Context group ID
GCF_013299825::NZ_JAAIMS010000003.1::G00028Context members
G4465_RS02720G4465_RS02725
Partner locus tags
G4465_RS02720G4465_RS02725
Partner old locus tags
G4465_02725G4465_02730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173863857.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4465_RS02720Primary locus identifier stored in the genes table.
Old locus tagG4465_02725Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIMS010000003.1Sequence record reported by the local genomic context database.
Genomic interval92 433-93 986 nt1 554 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span92 433-95 710 ntGCF_013299825::NZ_JAAIMS010000003.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013299825::NZ_JAAIMS010000003.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIMS010000003.1All displayed genes belong to this local TCS context.
Neighborhood span92 433-95 710 nt3 278 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
92 433 nt95 710 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4465_RS02720GCF_013299825#G4465_RS02720
RRunclassifiedCurrent focus
92 433-93 986 nt · Forward (+)
G4465_RS02725GCF_013299825#G4465_RS02725
HKClassic
94 142-95 710 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299825#G4465_RS02720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0132111
Simplified PFAM architecture for RROC_0132111
PFAM domain coverage: 191 / 517 aa (36.9%)
1 aa517 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[16-126] | HTH_18[435-514]
- Domain count: 2
- Matched identifier: RROC_0132111
- Positioned domains: Response_reg 16-126 ; HTH_18 435-514
Cluster members and taxonomy
Representative gene: GCF_013299825#G4465_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_013299825
AssemblyASM1329982v1 · Contighaploid
Genome composition3 191 344 bp · 43,0% GCMediterraneibacter gnavus
Signal transduction countsGenes 83 · HK 40 · RR 42CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key