1 HisKA_3#1
223-286 aa · 64 aa · 13.7% of protein
Raw token
HisKA_3:223:0.00000000000409:286:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G1C96_RS02380
Histidine kinase, Classic
Bifidobacterium moraviense · GCF_012932365
ClassHKTypeClassicLength468 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012932365#G1C96_RS02380Stable P2CS identifier used across views.
GenomeGCF_012932365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length468 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 468 aa (35.7%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa468 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
330-432 aa · 103 aa · 22.0% of protein
Raw token
HATPase_c:330:0.000000000609:432:104:109- Raw architecture: HisKA_3:223:0.00000000000409:286:64:68#HATPase_c:330:0.000000000609:432:104:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012932365::NZ_JAAIIH010000001.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span522363-524421Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG1C96_0457RefSeq proteinWP_335341905.1
Context group ID
GCF_012932365::NZ_JAAIIH010000001.1::G00008Context members
G1C96_RS02380G1C96_RS02385
Partner locus tags
G1C96_RS02380G1C96_RS02385
Partner old locus tags
G1C96_0457G1C96_0458
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_335341905.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG1C96_RS02380Primary locus identifier stored in the genes table.
Old locus tagG1C96_0457Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIIH010000001.1Sequence record reported by the local genomic context database.
Genomic interval522 363-523 769 nt1 407 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span522 363-524 421 ntGCF_012932365::NZ_JAAIIH010000001.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012932365::NZ_JAAIIH010000001.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIIH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span522 363-524 421 nt2 059 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
522 363 nt524 421 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G1C96_RS02380GCF_012932365#G1C96_RS02380
HKClassicCurrent focus
522 363-523 769 nt · Forward (+)
G1C96_RS02385GCF_012932365#G1C96_RS02385
RRNarL
523 747-524 421 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012932365#G1C96_RS02380The current gene is the representative for this cluster.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_1741256
Simplified PFAM architecture for HKOC_1741256
PFAM domain coverage: 66 / 468 aa (14.1%)
1 aa468 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[223-288]
- Domain count: 1
- Matched identifier: HKOC_1741256
- Positioned domains: HisKA_3 223-288
Cluster members and taxonomy
Representative gene: GCF_012932365#G1C96_RS02380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 675 323 · GCF_012932365
AssemblyASM1293236v1 · Contigreference genome · haploid
Genome composition2 563 591 bp · 67,5% GCBifidobacterium moraviense
Signal transduction countsGenes 39 · HK 11 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key