1 Response_reg#1
23-134 aa · 112 aa · 46.5% of protein
Raw token
Response_reg:23:2.63e-24:134:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G1C96_RS01780
Response regulator NarL family
Bifidobacterium moraviense · GCF_012932365
ClassRRTypeNarLLength241 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_012932365#G1C96_RS01780Stable P2CS identifier used across views.
GenomeGCF_012932365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length241 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 241 aa (70.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa241 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
178-234 aa · 57 aa · 23.7% of protein
Raw token
HTH_LUXR:178:0.00000000000924:234:57:58- Raw architecture: Response_reg:23:2.63e-24:134:113:111#HTH_LUXR:178:0.00000000000924:234:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_012932365::NZ_JAAIIH010000001.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span394721-395446Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG1C96_0348RefSeq proteinWP_169274925.1
Context group ID
GCF_012932365::NZ_JAAIIH010000001.1::G00006Context members
G1C96_RS01780
Partner locus tags
G1C96_RS01780
Partner old locus tags
G1C96_0348
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_169274925.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG1C96_RS01780Primary locus identifier stored in the genes table.
Old locus tagG1C96_0348Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIIH010000001.1Sequence record reported by the local genomic context database.
Genomic interval394 721-395 446 nt726 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span394 721-395 446 ntGCF_012932365::NZ_JAAIIH010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012932365::NZ_JAAIIH010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIIH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span394 721-395 446 nt726 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
394 721 nt395 446 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G1C96_RS01780GCF_012932365#G1C96_RS01780
RRNarLCurrent focus
394 721-395 446 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012932365#G1C96_RS01780The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0870064
Simplified PFAM architecture for RROC_0870064
PFAM domain coverage: 166 / 241 aa (68.9%)
1 aa241 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[22-133] | GerE[179-232]
- Domain count: 2
- Matched identifier: RROC_0870064
- Positioned domains: Response_reg 22-133 ; GerE 179-232
Cluster members and taxonomy
Representative gene: GCF_012932365#G1C96_RS01780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 675 323 · GCF_012932365
AssemblyASM1293236v1 · Contigreference genome · haploid
Genome composition2 563 591 bp · 67,5% GCBifidobacterium moraviense
Signal transduction countsGenes 39 · HK 11 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key