1 Response_reg#1
9-132 aa · 124 aa · 49.6% of protein
Raw token
Response_reg:9:1.29e-27:132:124:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G1C96_RS00295
Response regulator NarL family
Bifidobacterium moraviense · GCF_012932365
ClassRRTypeNarLLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_012932365#G1C96_RS00295Stable P2CS identifier used across views.
GenomeGCF_012932365Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 250 aa (72.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
187-244 aa · 58 aa · 23.2% of protein
Raw token
HTH_LUXR:187:2.5e-24:244:58:58- Raw architecture: Response_reg:9:1.29e-27:132:124:111#HTH_LUXR:187:2.5e-24:244:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_012932365::NZ_JAAIIH010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span66748-70180Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG1C96_0058RefSeq proteinWP_169274667.1
Context group ID
GCF_012932365::NZ_JAAIIH010000001.1::G00001Context members
G1C96_RS00295G1C96_RS00300
Partner locus tags
G1C96_RS00295G1C96_RS00300
Partner old locus tags
G1C96_0058G1C96_0059
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_169274667.1Primary protein accession used for annex mappings.
UniProt accessionA0A7Y0HXJ7Primary UniProt accession resolved in the annex database.
UniProt IDA0A7Y0HXJ7_9BIFIDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG1C96_RS00295Primary locus identifier stored in the genes table.
Old locus tagG1C96_0058Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIIH010000001.1Sequence record reported by the local genomic context database.
Genomic interval66 748-67 500 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span66 748-70 180 ntGCF_012932365::NZ_JAAIIH010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_012932365::NZ_JAAIIH010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIIH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span66 748-70 180 nt3 433 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
66 748 nt70 180 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G1C96_RS00295GCF_012932365#G1C96_RS00295
RRNarLCurrent focus
66 748-67 500 nt · Reverse (-)
G1C96_RS00300GCF_012932365#G1C96_RS00300
HKClassic
67 535-70 180 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012932365#G1C96_RS00295The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0725302
Simplified PFAM architecture for RROC_0725302
PFAM domain coverage: 179 / 250 aa (71.6%)
1 aa250 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-131] | GerE[189-244]
- Domain count: 2
- Matched identifier: RROC_0725302
- Positioned domains: Response_reg 9-131 ; GerE 189-244
Cluster members and taxonomy
Representative gene: GCF_012932365#G1C96_RS00295
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 675 323 · GCF_012932365
AssemblyASM1293236v1 · Contigreference genome · haploid
Genome composition2 563 591 bp · 67,5% GCBifidobacterium moraviense
Signal transduction countsGenes 39 · HK 11 · RR 23CheA 0 · PP 5
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key