1 Response_reg#1
7-120 aa · 114 aa · 41.3% of protein
Raw token
Response_reg:7:0.000000000000678:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS02720
Response regulator Spo0A family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeSpo0ALength276 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_010537155#Aargi30884_RS02720Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length276 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 276 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Spo0A_C#2
156-259 aa · 104 aa · 37.7% of protein
Raw token
Spo0A_C:156:5.11e-60:259:104:104- Raw architecture: Response_reg:7:0.000000000000678:120:114:111#Spo0A_C:156:5.11e-60:259:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_010537155::NZ_AP019695.1::G00005
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span525160-525990Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_05270RefSeq proteinWP_115714844.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00005Context members
Aargi30884_RS02720
Partner locus tags
Aargi30884_RS02720
Partner old locus tags
Aargi30884_05270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_115714844.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TGN9Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TGN9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS02720Primary locus identifier stored in the genes table.
Old locus tagAargi30884_05270Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval525 160-525 990 nt831 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span525 160-525 990 ntGCF_010537155::NZ_AP019695.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span525 160-525 990 nt831 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
525 160 nt525 990 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Aargi30884_RS02720GCF_010537155#Aargi30884_RS02720
RRSpo0ACurrent focus
525 160-525 990 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS02720The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0603528
Simplified PFAM architecture for RROC_0603528
PFAM domain coverage: 217 / 276 aa (78.6%)
1 aa276 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[156-259]
- Domain count: 2
- Matched identifier: RROC_0603528
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 156-259 ; Spo0A_C 156-259
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS02720
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key