1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:4.25e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS01160
Response regulator OmpR family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_010537155#Aargi30884_RS01160Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
159-234 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:159:1.21e-33:234:77:77- Raw architecture: Response_reg:5:4.25e-34:114:111:111#Trans_reg_C:159:1.21e-33:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_010537155::NZ_AP019695.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216155-218956Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_02190RefSeq proteinWP_115714535.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00002Context members
Aargi30884_RS01160Aargi30884_RS01165
Partner locus tags
Aargi30884_RS01160Aargi30884_RS01165
Partner old locus tags
Aargi30884_02190Aargi30884_02200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_115714535.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TDT7Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TDT7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS01160Primary locus identifier stored in the genes table.
Old locus tagAargi30884_02190Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval216 155-216 868 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 155-218 956 ntGCF_010537155::NZ_AP019695.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span216 155-218 956 nt2 802 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 155 nt218 956 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Aargi30884_RS01160GCF_010537155#Aargi30884_RS01160
RROmpRCurrent focus
216 155-216 868 nt · Forward (+)
Aargi30884_RS01165GCF_010537155#Aargi30884_RS01165
HKClassic
216 878-218 956 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS01160The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971219
Simplified PFAM architecture for RROC_0971219
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[159-233]
- Domain count: 2
- Matched identifier: RROC_0971219
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 159-233 ; Trans_reg_C 159-233
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS01160
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key