1 Response_reg#1
4-123 aa · 120 aa · 48.4% of protein
Raw token
Response_reg:4:0.000000000413:123:121:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Aargi30884_RS01450
Response regulator LytTR family
Amedibacterium intestinale · GCF_010537155
ClassRRTypeLytTRLength248 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_010537155#Aargi30884_RS01450Stable P2CS identifier used across views.
GenomeGCF_010537155Bacteria; Bacillati; Bacillota; Erysipelotrichia; Erysipelotrichales; Erysipelotrichaceae; Amedibacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage215 / 248 aa (86.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 LytTR#2
151-245 aa · 95 aa · 38.3% of protein
Raw token
LytTR:151:2.02e-19:245:100:98- Raw architecture: Response_reg:4:0.000000000413:123:121:111#LytTR:151:2.02e-19:245:100:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_010537155::NZ_AP019695.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span278240-278986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagAargi30884_02780RefSeq proteinWP_163051328.1
Context group ID
GCF_010537155::NZ_AP019695.1::G00003Context members
Aargi30884_RS01450
Partner locus tags
Aargi30884_RS01450
Partner old locus tags
Aargi30884_02780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_163051328.1Primary protein accession used for annex mappings.
UniProt accessionA0A6N4TG07Primary UniProt accession resolved in the annex database.
UniProt IDA0A6N4TG07_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagAargi30884_RS01450Primary locus identifier stored in the genes table.
Old locus tagAargi30884_02780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AP019695.1Sequence record reported by the local genomic context database.
Genomic interval278 240-278 986 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span278 240-278 986 ntGCF_010537155::NZ_AP019695.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_010537155::NZ_AP019695.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AP019695.1All displayed genes belong to this local TCS context.
Neighborhood span278 240-278 986 nt747 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
278 240 nt278 986 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Aargi30884_RS01450GCF_010537155#Aargi30884_RS01450
RRLytTRCurrent focus
278 240-278 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_010537155#Aargi30884_RS01450The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0747632
Simplified PFAM architecture for RROC_0747632
PFAM domain coverage: 206 / 248 aa (83.1%)
1 aa248 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-116] | LytTR[152-244]
- Domain count: 2
- Matched identifier: RROC_0747632
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; LytTR 152-244 ; LytTR 152-244
Cluster members and taxonomy
Representative gene: GCF_010537155#Aargi30884_RS01450
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 1 over 1 total members. Page 1 / 1.
GCF_010537155#Aargi30884_RS01450 (representative) |
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 583 452 · GCF_010537155
AssemblyASM1053715v1 · Complete Genomehaploid
Genome composition2 996 298 bp · 34,5% GCAmedibacterium intestinale
Signal transduction countsGenes 50 · HK 24 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassErysipelotrichiaOrderErysipelotrichalesFamilyErysipelotrichaceaeGenusAmedibacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Erysipelotrichia5Erysipelotrichales6Erysipelotrichaceae7Amedibacterium
Related genes
Preview from the same derived genome key