1 Response_reg#1
7-113 aa · 107 aa · 48.0% of protein
Raw token
Response_reg:7:4.58e-25:113:107:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS02465
Response regulator OmpR family
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS02465Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 223 aa (81.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
146-219 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:146:3.78e-22:219:78:77- Raw architecture: Response_reg:7:4.58e-25:113:107:111#Trans_reg_C:146:3.78e-22:219:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span539687-541542Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_02485RefSeq proteinWP_055221923.1
Context group ID
GCF_009875795::NZ_WWSI01000001.1::G00012Context members
GT575_RS02460GT575_RS02465
Partner locus tags
GT575_RS02460GT575_RS02465
Partner old locus tags
GT575_02480GT575_02485
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_055221923.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS02465Primary locus identifier stored in the genes table.
Old locus tagGT575_02485Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000001.1Sequence record reported by the local genomic context database.
Genomic interval540 871-541 542 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span539 687-541 542 ntGCF_009875795::NZ_WWSI01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span539 687-541 542 nt1 856 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
539 687 nt541 542 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS02460GCF_009875795#GT575_RS02460
HKClassic
539 687-540 874 nt · Reverse (-)
GT575_RS02465GCF_009875795#GT575_RS02465
RROmpRCurrent focus
540 871-541 542 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009875795#GT575_RS02465The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1604945
Simplified PFAM architecture for RROC_1604945
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-113] | Trans_reg_C[147-219]
- Domain count: 2
- Matched identifier: RROC_1604945
- Positioned domains: Response_reg 6-113 ; Response_reg 6-113 ; Trans_reg_C 147-219 ; Trans_reg_C 147-219
Cluster members and taxonomy
Representative gene: GCF_009875795#GT575_RS02465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key