1 Response_reg#1
4-113 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:4:3.47e-34:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT575_RS00985
Response regulator OmpR family
Coprococcus sp. BIOML-A2 · GCF_009875795
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875795#GT575_RS00985Stable P2CS identifier used across views.
GenomeGCF_009875795Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 223 aa (82.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-219 aa · 73 aa · 32.7% of protein
Raw token
Trans_reg_C:147:8.56e-26:219:75:77- Raw architecture: Response_reg:4:3.47e-34:113:110:111#Trans_reg_C:147:8.56e-26:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875795::NZ_WWSI01000001.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span213783-215497Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT575_01000RefSeq proteinWP_003698938.1
Context group ID
GCF_009875795::NZ_WWSI01000001.1::G00005Context members
GT575_RS00980GT575_RS00985
Partner locus tags
GT575_RS00980GT575_RS00985
Partner old locus tags
GT575_00995GT575_01000
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003698938.1Primary protein accession used for annex mappings.
UniProt accessionA0ABQ0C433Primary UniProt accession resolved in the annex database.
UniProt IDA0ABQ0C433_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT575_RS00985Primary locus identifier stored in the genes table.
Old locus tagGT575_01000Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSI01000001.1Sequence record reported by the local genomic context database.
Genomic interval214 826-215 497 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span213 783-215 497 ntGCF_009875795::NZ_WWSI01000001.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875795::NZ_WWSI01000001.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSI01000001.1All displayed genes belong to this local TCS context.
Neighborhood span213 783-215 497 nt1 715 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
213 783 nt215 497 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT575_RS00980GCF_009875795#GT575_RS00980
HKClassic
213 783-214 826 nt · Reverse (-)
GT575_RS00985GCF_009875795#GT575_RS00985
RROmpRCurrent focus
214 826-215 497 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_025567465#OCV43_RS06415Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1004623
Simplified PFAM architecture for RROC_1004623
PFAM domain coverage: 182 / 236 aa (77.1%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[17-125] | Trans_reg_C[160-232]
- Domain count: 2
- Matched identifier: RROC_1004623
- Positioned domains: Response_reg 17-125 ; Trans_reg_C 160-232
Cluster members and taxonomy
Representative gene: GCF_025567465#OCV43_RS06415
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 584 636 · GCF_009875795
AssemblyASM987579v1 · Contighaploid
Genome composition3 234 243 bp · 44,5% GCCoprococcus sp. BIOML-A2
Signal transduction countsGenes 78 · HK 40 · RR 37CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key