1 Response_reg#1
6-115 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:6:2.8e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT573_RS04045
Response regulator OmpR family
Dorea longicatena · GCF_009875715
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875715#GT573_RS04045Stable P2CS identifier used across views.
GenomeGCF_009875715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 240 aa (78.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-233 aa · 78 aa · 32.5% of protein
Raw token
Trans_reg_C:156:9.58e-31:233:78:77- Raw architecture: Response_reg:6:2.8e-36:115:111:111#Trans_reg_C:156:9.58e-31:233:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875715::NZ_WWSF01000002.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span326930-328895Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT573_04050RefSeq proteinWP_055303714.1
Context group ID
GCF_009875715::NZ_WWSF01000002.1::G00022Context members
GT573_RS04045GT573_RS04050
Partner locus tags
GT573_RS04045GT573_RS04050
Partner old locus tags
GT573_04050GT573_04055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055303714.1Primary protein accession used for annex mappings.
UniProt accessionA0A174J3D2Primary UniProt accession resolved in the annex database.
UniProt IDA0A174J3D2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT573_RS04045Primary locus identifier stored in the genes table.
Old locus tagGT573_04050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSF01000002.1Sequence record reported by the local genomic context database.
Genomic interval326 930-327 652 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span326 930-328 895 ntGCF_009875715::NZ_WWSF01000002.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875715::NZ_WWSF01000002.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span326 930-328 895 nt1 966 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
326 930 nt328 895 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT573_RS04045GCF_009875715#GT573_RS04045
RROmpRCurrent focus
326 930-327 652 nt · Forward (+)
GT573_RS04050GCF_009875715#GT573_RS04050
HKClassic
327 615-328 895 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471015#DW265_RS07915Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0888346
Simplified PFAM architecture for RROC_0888346
PFAM domain coverage: 188 / 240 aa (78.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-233]
- Domain count: 2
- Matched identifier: RROC_0888346
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-233 ; Trans_reg_C 156-233
Cluster members and taxonomy
Representative gene: GCF_003471015#DW265_RS07915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875715
AssemblyASM987571v1 · Contighaploid
Genome composition3 322 458 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 39 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key