1 Response_reg#1
5-82 aa · 78 aa · 38.2% of protein
Raw token
Response_reg:5:0.0000000000000221:82:80:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT573_RS03095
Response regulator LytTR family
Dorea longicatena · GCF_009875715
ClassRRTypeLytTRLength204 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_009875715#GT573_RS03095Stable P2CS identifier used across views.
GenomeGCF_009875715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length204 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage169 / 204 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa204 aa
Domain-by-domain annotation2 items
2 LytTR#2
106-196 aa · 91 aa · 44.6% of protein
Raw token
LytTR:106:6.4e-19:196:97:98- Raw architecture: Response_reg:5:0.0000000000000221:82:80:111#LytTR:106:6.4e-19:196:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_009875715::NZ_WWSF01000002.1::G00018
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span140372-140986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT573_03100RefSeq proteinWP_330376202.1
Context group ID
GCF_009875715::NZ_WWSF01000002.1::G00018Context members
GT573_RS03095
Partner locus tags
GT573_RS03095
Partner old locus tags
GT573_03100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_330376202.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT573_RS03095Primary locus identifier stored in the genes table.
Old locus tagGT573_03100Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSF01000002.1Sequence record reported by the local genomic context database.
Genomic interval140 372-140 986 nt615 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span140 372-140 986 ntGCF_009875715::NZ_WWSF01000002.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875715::NZ_WWSF01000002.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSF01000002.1All displayed genes belong to this local TCS context.
Neighborhood span140 372-140 986 nt615 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
140 372 nt140 986 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GT573_RS03095GCF_009875715#GT573_RS03095
RRLytTRCurrent focus
140 372-140 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS03625Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2099272
Simplified PFAM architecture for RROC_2099272
PFAM domain coverage: 171 / 204 aa (83.8%)
1 aa204 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-85] | LytTR[107-196]
- Domain count: 2
- Matched identifier: RROC_2099272
- Positioned domains: Response_reg 5-85 ; Response_reg 5-85 ; LytTR 107-196 ; LytTR 107-196
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS03625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875715
AssemblyASM987571v1 · Contighaploid
Genome composition3 322 458 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 39 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key