1 HAMP#1
76-149 aa · 74 aa · 19.2% of protein
Raw token
HAMP:76:0.0000000000374:149:74:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GT573_RS02080
Histidine kinase, Classic
Dorea longicatena · GCF_009875715
ClassHKTypeClassicLength386 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_009875715#GT573_RS02080Stable P2CS identifier used across views.
GenomeGCF_009875715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length386 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage250 / 386 aa (64.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa386 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-227 aa · 68 aa · 17.6% of protein
Raw token
HisKA:160:0.0000000000000102:227:68:643 HATPase_c#3
275-382 aa · 108 aa · 28.0% of protein
Raw token
HATPase_c:275:4.76e-24:382:110:109- Raw architecture: HAMP:76:0.0000000000374:149:74:69#HisKA:160:0.0000000000000102:227:68:64#HATPase_c:275:4.76e-24:382:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_009875715::NZ_WWSF01000001.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span415758-417640Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGT573_02085RefSeq proteinWP_006428459.1
Context group ID
GCF_009875715::NZ_WWSF01000001.1::G00012Context members
GT573_RS02080GT573_RS02085
Partner locus tags
GT573_RS02080GT573_RS02085
Partner old locus tags
GT573_02085GT573_02090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006428459.1Primary protein accession used for annex mappings.
UniProt accessionA6BDJ5Primary UniProt accession resolved in the annex database.
UniProt IDA6BDJ5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGT573_RS02080Primary locus identifier stored in the genes table.
Old locus tagGT573_02085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WWSF01000001.1Sequence record reported by the local genomic context database.
Genomic interval415 758-416 918 nt1 161 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span415 758-417 640 ntGCF_009875715::NZ_WWSF01000001.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_009875715::NZ_WWSF01000001.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WWSF01000001.1All displayed genes belong to this local TCS context.
Neighborhood span415 758-417 640 nt1 883 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
415 758 nt417 640 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
GT573_RS02080GCF_009875715#GT573_RS02080
HKClassicCurrent focus
415 758-416 918 nt · Forward (+)
GT573_RS02085GCF_009875715#GT573_RS02085
RROmpR
416 933-417 640 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS11380Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2557647
Simplified PFAM architecture for HKOC_2557647
PFAM domain coverage: 225 / 386 aa (58.3%)
1 aa386 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[98-147] | HisKA[160-227] | HATPase_c[275-381]
- Domain count: 3
- Matched identifier: HKOC_2557647
- Positioned domains: HAMP 98-147 ; HisKA 160-227 ; HATPase_c 275-381
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS11380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_009875715
AssemblyASM987571v1 · Contighaploid
Genome composition3 322 458 bp · 41,5% GCDorea longicatena
Signal transduction countsGenes 83 · HK 39 · RR 44CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key